Dataset Information

A Scalable FPGA Architecture for Randomly Connected Networks of Hodgkin-Huxley Neurons.

ABSTRACT: Human intelligence relies on the vast number of neurons and their interconnections that form a parallel computing engine. If we tend to design a brain-like machine, we will have no choice but to employ many spiking neurons, each one has a large number of synapses. Such a neuronal network is not only compute-intensive but also memory-intensive. The performance and the configurability of the modern FPGAs make them suitable hardware solutions to deal with these challenges. This paper presents a scalable architecture to simulate a randomly connected network of Hodgkin-Huxley neurons. To demonstrate that our architecture eliminates the need to use a high-end device, we employ the XC7A200T, a member of the mid-range Xilinx Artix®-7 family, as our target device. A set of techniques are proposed to reduce the memory usage and computational requirements. Here we introduce a multi-core architecture in which each core can update the states of a group of neurons stored in its corresponding memory bank. The proposed system uses a novel method to generate the connectivity vectors on the fly instead of storing them in a huge memory. This technique is based on a cyclic permutation of a single prestored connectivity vector per core. Moreover, to reduce both the resource usage and the computational latency even more, a novel approximate two-level counter is introduced to count the number of the spikes at the synapse for the sparse network. The first level is a low cost saturated counter implemented on FPGA lookup tables that reduces the number of inputs to the second level exact adder tree. It, therefore, results in much lower hardware cost for the counter circuit. These techniques along with pipelining make it possible to have a high-performance, scalable architecture, which could be configured for either a real-time simulation of up to 5120 neurons or a large-scale simulation of up to 65536 neurons in an appropriate execution time on a cost-optimized FPGA.

SUBMITTER: Akbarzadeh-Sherbaf K

PROVIDER: S-EPMC6190648 | biostudies-literature | 2018

REPOSITORIES: biostudies-literature

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A Scalable FPGA Architecture for Randomly Connected Networks of Hodgkin-Huxley Neurons.

Akbarzadeh-Sherbaf Kaveh K Abdoli Behrooz B Safari Saeed S Vahabie Abdol-Hossein AH

Frontiers in neuroscience 20181009

Human intelligence relies on the vast number of neurons and their interconnections that form a parallel computing engine. If we tend to design a brain-like machine, we will have no choice but to employ many spiking neurons, each one has a large number of synapses. Such a neuronal network is not only compute-intensive but also memory-intensive. The performance and the configurability of the modern FPGAs make them suitable hardware solutions to deal with these challenges. This paper presents a sca ...[more]

PMID: 30356803

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Project description:Traditional approaches to the problem of parameter estimation in biophysical models of neurons and neural networks usually adopt a global search algorithm (for example, an evolutionary algorithm), often in combination with a local search method (such as gradient descent) in order to minimize the value of a cost function, which measures the discrepancy between various features of the available experimental data and model output. In this study, we approach the problem of parameter estimation in conductance-based models of single neurons from a different perspective. By adopting a hidden-dynamical-systems formalism, we expressed parameter estimation as an inference problem in these systems, which can then be tackled using a range of well-established statistical inference methods. The particular method we used was Kitagawa's self-organizing state-space model, which was applied on a number of Hodgkin-Huxley-type models using simulated or actual electrophysiological data. We showed that the algorithm can be used to estimate a large number of parameters, including maximal conductances, reversal potentials, kinetics of ionic currents, measurement and intrinsic noise, based on low-dimensional experimental data and sufficiently informative priors in the form of pre-defined constraints imposed on model parameters. The algorithm remained operational even when very noisy experimental data were used. Importantly, by combining the self-organizing state-space model with an adaptive sampling algorithm akin to the Covariance Matrix Adaptation Evolution Strategy, we achieved a significant reduction in the variance of parameter estimates. The algorithm did not require the explicit formulation of a cost function and it was straightforward to apply on compartmental models and multiple data sets. Overall, the proposed methodology is particularly suitable for resolving high-dimensional inference problems based on noisy electrophysiological data and, therefore, a potentially useful tool in the construction of biophysical neuron models.

Dataset Information

A Scalable FPGA Architecture for Randomly Connected Networks of Hodgkin-Huxley Neurons.

Publications

A Scalable FPGA Architecture for Randomly Connected Networks of Hodgkin-Huxley Neurons.

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