Dataset Information

Diet characterization and a preliminary investigation into trophic niche placement for an endangered lake sturgeon (Acipenser fulvescens) population in the Saskatchewan River, SK, Canada.

ABSTRACT: All Canadian lake sturgeon (Acipenser fulvescens) populations are listed under the Committee on the Status of Endangered Wildlife in Canada (COSEWIC) due to their complex life history, loss of habitat and negative interactions with anthropomorphic activities. Lake sturgeon diets vary considerably across their range and depend on the local benthic invertebrate fauna, substrata, and competition with congener species. Hence, determining population-specific prey assemblages is a vital contribution to effective conservation efforts. We used carbon and nitrogen stable isotopes to identify lake sturgeon prey preferences for juvenile (<100 cm) and adult (>100 cm) age classes and their trophic niche in the Saskatchewan River, SK, Canada. In this system, lake sturgeon were the top predator within the benthic food web with no direct competition for preferred prey items from congener species. Their diet was dominated by crayfish (49.1± 6.4%) and snails (36.3 ± 5.5%), with no significant differences between age classes. Furthermore, lake sturgeon favoured deep rocky pools throughout the river; a habitat where crayfish and snails are typically found. Therefore, conservation efforts should be directed at preserving these habitats for the residing benthic invertebrate community, and the lake sturgeon's ability to access them.

SUBMITTER: Braun DP

PROVIDER: S-EPMC6211698 | biostudies-literature | 2018

REPOSITORIES: biostudies-literature

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Diet characterization and a preliminary investigation into trophic niche placement for an endangered lake sturgeon (Acipenser fulvescens) population in the Saskatchewan River, SK, Canada.

Braun David P DP Phillips Iain D ID Nanayakkara Lushani L Wissel Björn B

PloS one 20181101 11

All Canadian lake sturgeon (Acipenser fulvescens) populations are listed under the Committee on the Status of Endangered Wildlife in Canada (COSEWIC) due to their complex life history, loss of habitat and negative interactions with anthropomorphic activities. Lake sturgeon diets vary considerably across their range and depend on the local benthic invertebrate fauna, substrata, and competition with congener species. Hence, determining population-specific prey assemblages is a vital contribution t ...[more]

PMID: 30383784

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Project description:BackgroundTo determine the presence and abundance of an aquatic species in large waterbodies, especially when populations are at low densities, is highly challenging for conservation biologists. Environmental DNA (eDNA) has the potential to offer a noninvasive and cost-effective method to complement traditional population monitoring, however, eDNA has not been extensively applied to study large migratory species. Chinese sturgeon (Acipenser sinensis), is the largest anadromous migratory fish in the Yangtze River, China, and in recent years its population has dramatically declined and spawning has failed, bringing this species to the brink of extinction. In this study, we aim to test the detectability of eDNA methods to determine the presence and relative abundance of reproductive stock of the species and whether eDNA can be used as a tool to reflect behavioral patterns. Chinese sturgeon eDNA was collected from four sites along the spawning ground across an eight month period, to investigate the temporal and spatial distribution using droplet digital PCR (ddPCR).ResultsWe designed a pair of specific primers for Chinese sturgeon and demonstrated the high sensitivity of ddPCR to detect and quantify the Chinese sturgeon eDNA concentration with the limit of detection 0.17 copies/μl, with Chinese sturgeon eDNA been intermittently detected at all sampling sites. There was a consistent temporal pattern among four of the sampling sites that could reflect the movement characteristics of the Chinese sturgeon in the spawning ground, but without a spatial pattern. The eDNA concentration declined by approximately 2-3 × between December 2018 and December 2019.ConclusionsThe results prove the efficacy of eDNA for monitoring reproductive stock of the Chinese sturgeon and the e decreased eDNA concentration reflect that Chinese sturgeon may survive with an extremely small number of reproductive stock in the Yangtze River. Accordingly, we suggest future conservation measures should focus on both habitat restoration and matured fish restocking to ensure successful spawning. Overall, this study provides encouraging support for the application of eDNA methods to monitor endangered aquatic species.

Project description:BackgroundThe Chinese sturgeon (Acipenser sinensis) is endangered through anthropogenic activities including over-fishing, damming, shipping, and pollution. Controlled reproduction has been adopted and successfully conducted for conservation. However, little information is available on the reproductive regulation of the species. In this study, we conducted de novo transcriptome assembly of the gonad tissue to create a comprehensive dataset for A. sinensis.ResultsThe Illumina sequencing platform was adopted to obtain 47,333,701 and 47,229,705 high quality reads from testis and ovary cDNA libraries generated from three-year-old A. sinensis. We identified 86,027 unigenes of which 30,268 were annotated in the NCBI non-redundant protein database and 28,281 were annotated in the Swiss-prot database. Among the annotated unigenes, 26,152 and 7,734 unigenes, respectively, were assigned to gene ontology categories and clusters of orthologous groups. In addition, 12,557 unigenes were mapped to 231 pathways in the Kyoto Encyclopedia of Genes and Genomes Pathway database. A total of 1,896 unigenes, potentially differentially expressed between the two gonad types, were found, with 1,894 predicted to be up-regulated in ovary and only two in testis. Fifty-five potential gametogenesis-related genes were screened in the transcriptome and 34 genes with significant matches were found. Besides, more paralogs of 11 genes in three gene families (sox, apolipoprotein and cyclin) were found in A. sinensis compared to their orthologs in the diploid Danio rerio. In addition, 12,151 putative simple sequence repeats (SSRs) were detected.ConclusionsThis study provides the first de novo transcriptome analysis currently available for A. sinensis. The transcriptomic data represents the fundamental resource for future research on the mechanism of early gametogenesis in sturgeons. The SSRs identified in this work will be valuable for assessment of genetic diversity of wild fish and genealogy management of cultured fish.

Dataset Information

Diet characterization and a preliminary investigation into trophic niche placement for an endangered lake sturgeon (Acipenser fulvescens) population in the Saskatchewan River, SK, Canada.

Publications

Diet characterization and a preliminary investigation into trophic niche placement for an endangered lake sturgeon (Acipenser fulvescens) population in the Saskatchewan River, SK, Canada.

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