Ontology highlight
ABSTRACT:
SUBMITTER: Kohl TA
PROVIDER: S-EPMC6238766 | biostudies-literature | 2018
REPOSITORIES: biostudies-literature
Kohl Thomas Andreas TA Utpatel Christian C Schleusener Viola V De Filippo Maria Rosaria MR Beckert Patrick P Cirillo Daniela Maria DM Niemann Stefan S
PeerJ 20181113
Analyzing whole-genome sequencing data of <i>Mycobacterium tuberculosis</i> complex (MTBC) isolates in a standardized workflow enables both comprehensive antibiotic resistance profiling and outbreak surveillance with highest resolution up to the identification of recent transmission chains. Here, we present MTBseq, a bioinformatics pipeline for next-generation genome sequence data analysis of MTBC isolates. Employing a reference mapping based workflow, MTBseq reports detected variant positions a ...[more]