Browse
Submit Data
Databases
API
Help

Dataset Information

17 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Draft Genome Sequences of Pseudomonas MWU13-2625 and MWU12-2115, Isolated from a Wild Cranberry Bog at the Cape Cod National Seashore.

ABSTRACT: Two highly similar Pseudomonas sp. genome sequences from wetland bog soil isolates with draft genomes of ~6.3 Mbp are reported. Although the exact taxonomic placement and environmental roles of these bacteria are unclear, predicted genes for stress tolerance, antibiotic resistance, and a type VI secretion system were detected.

SUBMITTER: Ebadzadsahrai G

PROVIDER: S-EPMC6256693 | biostudies-literature |

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Similar Datasets

Draft Genome Sequence of Pseudomonas sp. Strains MWU12-2319 and MWU12-2311, Isolated from a Wild Cranberry Bog in the Cape Cod National Seashore.

Project description:Pseudomonas sp. strains MWU12-2319 and MWU12-2311 were isolated from the soil of a wild cranberry bog in the Cape Cod National Seashore as part of a culture-dependent bacterial population survey. The genomes exceed 7 Mbp and contain putative gene clusters for the biosurfactant orfamides A and C.

| S-EPMC9671024 | biostudies-literature

Draft Genome Sequences of Pseudomonas sp. Strains MWU12-2037 and MWU12-2345, Isolated from Peat and Sandy Bog Soils in the Cape Cod National Seashore, Massachusetts.

Project description:Pseudomonas sp. strains MWU12-2037 and MWU12-2345 were isolated from peat and sandy bog soils in wild cranberry bogs in the Cape Cod National Seashore (Massachusetts, USA) as part of a culture-dependent survey of relatively unexplored wetlands soil microbiomes. Both genomes exceeded 7 Mbp.

| S-EPMC9387251 | biostudies-literature

Draft Genome Sequence of Pseudomonas sp. Strain MWU12-2534b, Isolated from a Wild Cranberry Bog in Truro, Massachusetts.

Project description:An unknown Pseudomonas sp. most closely related to Pseudomonas ficuserectae and Pseudomonas protegens was isolated from the rhizospheres of wild cranberry plants in the Cape Cod National Seashore, in the United States. The draft genome of MWU12-2534b is 6.7 Mbp, has 63.32% GC content, and contains multiple potential virulence and antibiotic resistance genes.

| S-EPMC6256566 | biostudies-literature

Draft Genome Sequence of Pseudomonas sp. Strain MWU12-2323, Isolated from a Wild Cranberry Bog in Truro, Massachusetts.

Project description:Exploration of novel environments such as low-pH wild cranberry bog soils yields a rich diversity of bacteria, including Pseudomonas spp. Here, we present the draft genome sequence of Pseudomonas sp. strain MWU12-2323, isolated from wild cranberry plant rhizosphere. The genome has secondary metabolite genes encoding carbohydrate polymer-degrading enzymes.

| S-EPMC6952666 | biostudies-literature

Draft Genome Sequence of Pseudomonas protegens Strain MWU12-2233, Isolated from Wild Cranberry Fruit in Provincetown, Massachusetts.

Project description:Pseudomonas protegens strain MWU12-2233 was isolated from wild cranberry fruit surfaces in Provincetown, MA. The genome contains putative hydrogen cyanide synthase and type VI secretion systems which can act symbiotically on plant health by suppressing competitors, indicating a role in indigenous microfloral disease and insect pest suppression.

| S-EPMC9387235 | biostudies-literature

Draft Genome Sequence of Pseudomonas sp. Strain MWU13-2860, Isolated from a Wild Cranberry Bog in Truro, Massachusetts.

Project description:Pseudomonas sp. strain MWU13-2860 was isolated from the rhizosphere of wild cranberry plants and is not closely related to Pseudomonas spp. frequently isolated from soil. Its genome is 7.2 Mbp, with 61.24% G+C content, and contains homologs that may encode the carbohydrate-degrading enzymes xylanase, laccase, cellulase, alginate lyase, amylase, and chitinase.

| S-EPMC6256550 | biostudies-literature

Draft Genome Sequence of Aquitalea sp. Strain MWU14-2217, Isolated from a Wild Cranberry Bog in Provincetown, Massachusetts.

Project description:Aquitalea sp. strain MWU14-2217 was isolated from wild cranberry bog soils in the Cape Cod National Seashore. The draft genome is 4.3 Mbp with 4,133 coding sequences and contains predicted genes for phenazines, colicins, siderophores, and putative exporters of these compounds and genes responsible for motility and biofilm formation.

| S-EPMC6284732 | biostudies-literature

Draft Genome Sequence of Pseudomonas sp. Strain MWU13-3659, Isolated from Commercial Cranberry Bog Soil in Massachusetts, USA.

Project description:Pseudomonas sp. strain MWU13-3659 was isolated from cultivated cranberry bog soil in Massachusetts, USA. Its closest known relative is Pseudomonas entomophila (digital DNA-DNA hybridization [d4 formula] value of 57.2% and average nucleotide identity based on BLAST value of 93.90), and its genome contains putative gene clusters for the production of polyketides, siderophores, and cyclic lipopeptides that have insecticidal activity in other proteobacteria.

| S-EPMC9670869 | biostudies-literature

Draft Genome Sequences of Pseudomonas sp. Strains MWU 12-2029, MWU 12-3088, and MWU 12-3091, Isolated from Wild and Cultivated Massachusetts Cranberry Bogs.

Project description:Pseudomonas sp. strains MWU12-2029, MWU12-3088, and MWU12-3091 were isolated from wild and cultivated cranberry bog soils in southeastern Massachusetts. The three isolates are closely related to Pseudomonas kribbensis, a not validly published member of the P. fluorescens group, and contain three putative insecticidal protein genes, including the toxin complex A gene (tcaC).

| S-EPMC9670975 | biostudies-literature

Draft Genome Sequences of Pseudomonas spp. Isolated from Berry Surfaces in Commercial Cranberry Bogs in Massachusetts, USA.

Project description:The surfaces of plants are colonized by a rich diversity of microbes but are largely unexplored. Here, we present the draft genome sequences of five Pseudomonas spp. isolated from cultivated cranberry fruit surfaces. Although the isolates represent four different species, their genomes all contain conserved iron sequestration and uptake genes.

| S-EPMC8265235 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data