Dataset Information

Avian data from Kenyir rainforest trail.

ABSTRACT: This data article is constructed using avian (bird) counts from a recently identified trail in Kenyir rainforest, East Peninsular Malaysia. Avian chirps and naked eye visual were simultaneously used to locate the birds. After visual binocular and digital image inspection, identification of avian species were carried out using reference books. Data tabulation are divided by monsoon seasons and months before interpret using Shannon and Evenness indices. The highlights like feeding guilds, nativity, iconic species and statuses in the wild are presented with the data to increase its value. Within these, a total of 457 avian individuals from 36 avian family groups were recorded from which, 25 of these avian species occur as near threatened, vulnerable, endangered and critically endangered in the wild. Having these, the tabulated data becomes a calendar for seasonal availability of avian species which considers the 1.0?km trail suitable for bird watching, scientific study and ecotourism purposes.

SUBMITTER: Nelson BR

PROVIDER: S-EPMC6290243 | biostudies-literature | 2018 Dec

REPOSITORIES: biostudies-literature

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Avian data from Kenyir rainforest trail.

Nelson Bryan Raveen BR David Gertrude G Mokhtar Ahmad Fakhrurrazi AF Mamat Mazrul Aswady MA Rahman Abdul Jalil Abdul AJA

Data in brief 20181128

This data article is constructed using avian (bird) counts from a recently identified trail in Kenyir rainforest, East Peninsular Malaysia. Avian chirps and naked eye visual were simultaneously used to locate the birds. After visual binocular and digital image inspection, identification of avian species were carried out using reference books. Data tabulation are divided by monsoon seasons and months before interpret using Shannon and Evenness indices. The highlights like feeding guilds, nativity ...[more]

PMID: 30761345

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Project description:The evolutionary relationships of modern birds are among the most challenging to understand in systematic biology and have been debated for centuries. To address this challenge, we assembled or collected the genomes of 48 avian species spanning most orders of birds, including all Neognathae and two of the five Palaeognathae orders, and used the genomes to construct a genome-scale avian phylogenetic tree and perform comparative genomics analyses (Jarvis et al. in press; Zhang et al. in press). Here we release assemblies and datasets associated with the comparative genome analyses, which include 38 newly sequenced avian genomes plus previously released or simultaneously released genomes of Chicken, Zebra finch, Turkey, Pigeon, Peregrine falcon, Duck, Budgerigar, Adelie penguin, Emperor penguin and the Medium Ground Finch. We hope that this resource will serve future efforts in phylogenomics and comparative genomics.The 38 bird genomes were sequenced using the Illumina HiSeq 2000 platform and assembled using a whole genome shotgun strategy. The 48 genomes were categorized into two groups according to the N50 scaffold size of the assemblies: a high depth group comprising 23 species sequenced at high coverage (>50X) with multiple insert size libraries resulting in N50 scaffold sizes greater than 1 Mb (except the White-throated Tinamou and Bald Eagle); and a low depth group comprising 25 species sequenced at a low coverage (~30X) with two insert size libraries resulting in an average N50 scaffold size of about 50 kb. Repetitive elements comprised 4%-22% of the bird genomes. The assembled scaffolds allowed the homology-based annotation of 13,000?~?17000 protein coding genes in each avian genome relative to chicken, zebra finch and human, as well as comparative and sequence conservation analyses.Here we release full genome assemblies of 38 newly sequenced avian species, link genome assembly downloads for the 7 of the remaining 10 species, and provide a guideline of genomic data that has been generated and used in our Avian Phylogenomics Project. To the best of our knowledge, the Avian Phylogenomics Project is the biggest vertebrate comparative genomics project to date. The genomic data presented here is expected to accelerate further analyses in many fields, including phylogenetics, comparative genomics, evolution, neurobiology, development biology, and other related areas.

Dataset Information

Avian data from Kenyir rainforest trail.

Publications

Avian data from Kenyir rainforest trail.

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