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Validation data for a hybrid smoothed dissipative particle dynamics (SDPD) spatial stochastic simulation algorithm (sSSA) method.

ABSTRACT: We present the validation of the hybrid sSSA-SDPD method for advection-diffusion-reaction problems coupled to discrete biochemical systems, as presented in the publication "A hybrid smoothed dissipative particle dynamics (SDPD) spatial stochastic simulation algorithm (sSSA) for advection-diffusion-reaction problems" (Drawert et al., 2019). We validate 1D diffusion, and 2D diffusion cases against their analytical solutions. We present graphs and tables of data showing the error in the simulation method.

SUBMITTER: Drawert B 

PROVIDER: S-EPMC6293021 | biostudies-literature | 2019 Feb

REPOSITORIES: biostudies-literature

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Validation data for a hybrid smoothed dissipative particle dynamics (SDPD) spatial stochastic simulation algorithm (sSSA) method.

Drawert Brian B   Jacob Bruno B   Li Zhen Z   Yi Tau-Mu TM   Petzold Linda L  

Data in brief 20181205

We present the validation of the hybrid sSSA-SDPD method for advection-diffusion-reaction problems coupled to discrete biochemical systems, as presented in the publication "A hybrid smoothed dissipative particle dynamics (SDPD) spatial stochastic simulation algorithm (sSSA) for advection-diffusion-reaction problems" (Drawert et al., 2019). We validate 1D diffusion, and 2D diffusion cases against their analytical solutions. We present graphs and tables of data showing the error in the simulation  ...[more]

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