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A Multi-Omics Database for Parasitic Nematodes and Trematodes.

ABSTRACT: Helminth.net ( www.helminth.net ) is a web-based resource that was launched in 2000 as simply " Nematode.net " to host and investigate gene sequences from nematode genomes. Over the years it has evolved to become the moniker for a collection of databases: Nematode.net and Trematode.net . These databases host information for 73 nematode (roundworms) and 17 trematode (flatworms) species and serve as backbone for a number of tools that allow users to query slices of the data for multifactorial combinations of species-omics properties. Recent focus has been on inclusion of gene and protein expression data, population genomics and cross-kingdom interactions (metagenomics datasets). This chapter describes the website, the available tools and some of the new features.

SUBMITTER: Martin J

PROVIDER: S-EPMC6314195 | biostudies-literature | 2018

REPOSITORIES: biostudies-literature

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A Multi-Omics Database for Parasitic Nematodes and Trematodes.

Martin John J Tyagi Rahul R Rosa Bruce A BA Mitreva Makedonka M

Methods in molecular biology (Clifton, N.J.) 20180101

Helminth.net ( www.helminth.net ) is a web-based resource that was launched in 2000 as simply " Nematode.net " to host and investigate gene sequences from nematode genomes. Over the years it has evolved to become the moniker for a collection of databases: Nematode.net and Trematode.net . These databases host information for 73 nematode (roundworms) and 17 trematode (flatworms) species and serve as backbone for a number of tools that allow users to query slices of the data for multifactorial comb ...[more]

PMID: 29761465

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