Retrotranspositional landscape of Asian rice revealed by 3000 genomes.
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ABSTRACT:
SUBMITTER: Carpentier MC
PROVIDER: S-EPMC6318337 | biostudies-literature | 2019 Jan
REPOSITORIES: biostudies-literature
Publications
Retrotranspositional landscape of Asian rice revealed by 3000 genomes.
Carpentier Marie-Christine MC Manfroi Ernandes E Wei Fu-Jin FJ Wu Hshin-Ping HP Lasserre Eric E Llauro Christel C Debladis Emilie E Akakpo Roland R Hsing Yue-Ie YI Panaud Olivier O
Nature communications 20190103 1
The recent release of genomic sequences for 3000 rice varieties provides access to the genetic diversity at species level for this crop. We take advantage of this resource to unravel some features of the retrotranspositional landscape of rice. We develop software TRACKPOSON specifically for the detection of transposable elements insertion polymorphisms (TIPs) from large datasets. We apply this tool to 32 families of retrotransposons and identify more than 50,000 TIPs in the 3000 rice genomes. Mo ...[more]
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