Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Draft Genome Sequence of Halomonas elongata MH25661 Isolated from a Saline Creek in the Andes of Peru.

ABSTRACT: Halomonas elongata strain MH25661, a moderate halophile, was isolated from a saline creek in the Andes of Peru. Genome annotation analyses revealed genes that respond to osmotic stress and oxidative stress, genes that are involved in sporulation, and genes that are involved in transport systems and resistance to antibiotics and toxic compounds.

SUBMITTER: Mamani JI

PROVIDER: S-EPMC6318351 | biostudies-literature | 2019 Jan

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

Draft Genome Sequence of Halomonas elongata MH25661 Isolated from a Saline Creek in the Andes of Peru.

Mamani J Ilucion JI Pacheco Kevin B KB Elorrieta Paola P Romoacca Pedro P Castelan Hugo H Davila Sonia S Sierra Jose L JL Quispe-Ricalde Maria A MA

Microbiology resource announcements 20190103 1

Halomonas elongata strain MH25661, a moderate halophile, was isolated from a saline creek in the Andes of Peru. Genome annotation analyses revealed genes that respond to osmotic stress and oxidative stress, genes that are involved in sporulation, and genes that are involved in transport systems and resistance to antibiotics and toxic compounds. ...[more]

PMID: 30637380

Similar Datasets

Draft Genome Sequence of Red-Heat-Causing Halomonas eurihalina MS1, a Moderately Halophilic Bacterium Isolated from Saline Soil in Alicante, Spain.

Project description:Here, we report the draft genome sequence of Halomonas eurihalina MS1, which was isolated from saline soil in Alicante, Spain, and causes the condition known as "red heat" in salt-packed cured hides, decreasing their commercial value for leather production.

| S-EPMC6979305 | biostudies-literature

Draft Genome Sequence of the Anaerobic Arsenite-Oxidizing Halomonas sp. Strain ANAO-440, Isolated from an Alkaline Saline Lake in Khovsgol, Mongolia.

Project description:The draft genome sequence of Halomonas sp. strain ANAO-440 contains 3,866 predicted protein-coding sequences. This strain is capable of anaerobic arsenite oxidation and encodes an arxA-type arsenite oxidase within the arxB2AB1CD gene island. This genome sequence provides valuable information regarding the physiological diversity of Arx-dependent arsenite-oxidizing microorganisms.

| S-EPMC8530029 | biostudies-literature

Draft genome sequence of Halomonas smyrnensis AAD6T.

Project description:Halomonas smyrnensis AAD6(T) is a Gram-negative, aerobic, exopolysaccharide-producing, and moderately halophilic bacterium that produces levan, a fructose homopolymer with many potential uses in various industries. We report the draft genome sequence of H. smyrnensis AAD6(T), which will accelerate research on the rational design and optimization of microbial levan production.

| S-EPMC3458665 | biostudies-literature

Draft Genome Sequence of Halomonas hydrothermalis MTCC 5445, Isolated from the West Coast of India.

Project description:We announce here the draft genome sequence of Halomonas hydrothermalis MTCC 5445, a halophilic bacterium of the class Gammaproteobacteria. It was isolated from the sea coast of Aadri, Veraval, Gujarat, India. Its genome contains genes for polyhydroxybutyrate (PHB), a biodegradable polymer that can be used as a substitute for petroleum plastics.

| S-EPMC4299900 | biostudies-literature

Draft genome sequence of the human pathogen Halomonas stevensii S18214T.

Project description:Halomonas stevensii is a Gram-negative, moderately halophilic bacterium causing environmental contamination and infections in a dialysis center. Here we present the 3.7-Mb draft genome sequence of the type strain (S18214(T)) of H. stevensii, which will give insight into the pathogenic potential of H. stevensii.

| S-EPMC3430342 | biostudies-literature

Revision and reannotation of the Halomonas elongata DSM 2581T genome.

Project description:The genome of the Halomonas elongata type strain DSM 2581, an industrial producer, was reevaluated using the Illumina HiSeq2500 technology. To resolve duplication-associated ambiguities, PCR products were generated and sequenced. Outside of duplications, 72 sequence corrections were required, of which 24 were point mutations and 48 were indels of one or few bases. Most of these were associated with polynucleotide stretches (poly-T stretch overestimated in 19 cases, poly-C underestimated in 15 cases). These problems may be attributed to using 454 technology for original genome sequencing. On average, the original genome sequence had only one error in 56 kb. There were 23 frameshift error corrections in the 29 protein-coding genes affected by sequence revision. The genome has been subjected to major reannotation in order to substantially increase the annotation quality.

| S-EPMC5552945 | biostudies-literature

Draft Genome Sequence of the Plant Growth-Promoting Bacterium Pseudomonas sp. SCPG-7, Isolated from Saline Soil.

Project description:Pseudomonas sp. SCPG-7 was isolated from saline soil. The strain can increase the germination rate of cotton seeds and promote the growth of cotton seedlings under salt stress conditions. The genome is 6,256,198 bp long, containing 5,672 predicted open reading frames.

| S-EPMC5552980 | biostudies-other

Draft Genome Sequence of Bacillus thuringiensis Strain UNMSM10RA, Isolated from Potato Crop Soil in Peru.

Project description:The 5.5-Mb genome sequence of Bacillus thuringiensis strain UNMSM10RA, isolated from potato crop soil, is reported in this study. The strain UNMSM10RA contains 5,347 protein-coding sequences, 105 tRNA genes, 15 rRNA genes, and 5 noncoding RNA (ncRNA) genes, with an average G+C content of 35.1%.

| S-EPMC6952650 | biostudies-literature

Draft Genome Sequence of the Moderately Halophilic Gammaproteobacterium Halomonas anticariensis FP35T.

Project description:Halomonas anticariensis strain FP35(T) is a moderately halophilic bacterium isolated from a soil sample taken from Fuente de Piedra, a saline wetland in the province of Málaga (Spain), which produces an exopolysaccharide and quorum-sensing signaling molecules of the type N-acylhomoserine lactone. We report here the draft genome sequence of this gammaproteobacterium.

| S-EPMC3715671 | biostudies-literature

Draft genome sequence of Halomonas meridiana R1t3 isolated from the surface microbiota of the Caribbean Elkhorn coral Acropora palmata.

Project description:Members of the gammaproteobacterial genus Halomonas are common in marine environments. Halomonas and other members of the Oceanospirillales have recently been identified as prominent members of the surface microbiota of reef-building corals. Halomonas meridiana strain R1t3 was isolated from the surface mucus layer of the scleractinian coral Acropora palmata in 2005 from the Florida Keys. This strain was chosen for genome sequencing to provide insight into the role of commensal heterotrophic bacteria in the coral holobiont. The draft genome consists of 290 scaffolds, totaling 3.5 Mbp in length and contains 3397 protein-coding genes.

| S-EPMC4597393 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data