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Dataset from de novo transcriptome assembly of Nephelium lappaceum aril.

ABSTRACT: Nephelium lappaceum (Rambutan), is one of tropical fruit in which - cultivated widely in Indonesia and has good taste and aroma. However, the transcriptomic study of rambutan has limited. In this study, we performed transcriptome assembly using paired-end Illumina technology. The assembled transcriptome was constructed using Trinity and after filtering and removal sequences redundancy produced 36,303 contigs. The contig ranged 201-11,770?bp and N50 has 1327?bp. The contig was annotated with several databases such as SwissProt, TrEMBL, and nr/nt of NCBI databases. The raw reads are deposited in the DDBJ with DRA accession number, DRA007359: https://www.ncbi.nlm.nih.gov/sra/?term=DRA007359. The assembled contigs of transcriptome are deposited in the DDBJ TSA repository with accession number IADQ01000001-IADQ01036303: ftp://ftp.ddbj.nig.ac.jp/ddbj_database/tsa/IADQ.gz and also can be accessed at http://rujakbase.id.

SUBMITTER: Matra DD

PROVIDER: S-EPMC6321968 | biostudies-literature | 2019 Feb

REPOSITORIES: biostudies-literature

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Dataset from de novo transcriptome assembly of Nephelium lappaceum aril.

Matra Deden Derajat DD Ritonga Arya Widura AW Natawijaya Azis A Poerwanto Roedhy R Sobir Widodo Winarso Drajad WD Inoue Eiichi E

Data in brief 20181214

Nephelium lappaceum (Rambutan), is one of tropical fruit in which - cultivated widely in Indonesia and has good taste and aroma. However, the transcriptomic study of rambutan has limited. In this study, we performed transcriptome assembly using paired-end Illumina technology. The assembled transcriptome was constructed using Trinity and after filtering and removal sequences redundancy produced 36,303 contigs. The contig ranged 201-11,770 bp and N50 has 1327 bp. The contig was annotated wi ...[more]

PMID: 30627609

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