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Dataset from de novo transcriptome assembly of Nephelium lappaceum aril.


ABSTRACT: Nephelium lappaceum (Rambutan), is one of tropical fruit in which - cultivated widely in Indonesia and has good taste and aroma. However, the transcriptomic study of rambutan has limited. In this study, we performed transcriptome assembly using paired-end Illumina technology. The assembled transcriptome was constructed using Trinity and after filtering and removal sequences redundancy produced 36,303 contigs. The contig ranged 201-11,770?bp and N50 has 1327?bp. The contig was annotated with several databases such as SwissProt, TrEMBL, and nr/nt of NCBI databases. The raw reads are deposited in the DDBJ with DRA accession number, DRA007359: https://www.ncbi.nlm.nih.gov/sra/?term=DRA007359. The assembled contigs of transcriptome are deposited in the DDBJ TSA repository with accession number IADQ01000001-IADQ01036303: ftp://ftp.ddbj.nig.ac.jp/ddbj_database/tsa/IADQ.gz and also can be accessed at http://rujakbase.id.

SUBMITTER: Matra DD 

PROVIDER: S-EPMC6321968 | biostudies-literature | 2019 Feb

REPOSITORIES: biostudies-literature

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Dataset from de novo transcriptome assembly of <i>Nephelium lappaceum</i> aril.

Matra Deden Derajat DD   Ritonga Arya Widura AW   Natawijaya Azis A   Poerwanto Roedhy R   Sobir   Widodo Winarso Drajad WD   Inoue Eiichi E  

Data in brief 20181214


<i>Nephelium lappaceum</i> (Rambutan), is one of tropical fruit in which - cultivated widely in Indonesia and has good taste and aroma. However, the transcriptomic study of rambutan has limited. In this study, we performed transcriptome assembly using paired-end Illumina technology. The assembled transcriptome was constructed using Trinity and after filtering and removal sequences redundancy produced 36,303 contigs. The contig ranged 201-11,770 bp and N50 has 1327 bp. The contig was annotated wi  ...[more]

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