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Human bone marrow assessment by single-cell RNA sequencing, mass cytometry, and flow cytometry.


ABSTRACT: New techniques for single-cell analysis have led to insights into hematopoiesis and the immune system, but the ability of these techniques to cross-validate and reproducibly identify the biological variation in diverse human samples is currently unproven. We therefore performed a comprehensive assessment of human bone marrow cells using both single-cell RNA sequencing and multiparameter flow cytometry from 20 healthy adult human donors across a broad age range. These data characterize variation between healthy donors as well as age-associated changes in cell population frequencies. Direct comparison of techniques revealed discrepancy in the quantification of T lymphocyte and natural killer cell populations. Orthogonal validation of immunophenotyping using mass cytometry demonstrated a strong correlation with flow cytometry. Technical replicates using single-cell RNA sequencing matched robustly, while biological replicates showed variation. Given the increasing use of single-cell technologies in translational research, this resource serves as an important reference data set and highlights opportunities for further refinement.

SUBMITTER: Oetjen KA 

PROVIDER: S-EPMC6328018 | biostudies-literature | 2018 Dec

REPOSITORIES: biostudies-literature

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Human bone marrow assessment by single-cell RNA sequencing, mass cytometry, and flow cytometry.

Oetjen Karolyn A KA   Lindblad Katherine E KE   Goswami Meghali M   Gui Gege G   Dagur Pradeep K PK   Lai Catherine C   Dillon Laura W LW   McCoy J Philip JP   Hourigan Christopher S CS  

JCI insight 20181206 23


New techniques for single-cell analysis have led to insights into hematopoiesis and the immune system, but the ability of these techniques to cross-validate and reproducibly identify the biological variation in diverse human samples is currently unproven. We therefore performed a comprehensive assessment of human bone marrow cells using both single-cell RNA sequencing and multiparameter flow cytometry from 20 healthy adult human donors across a broad age range. These data characterize variation  ...[more]

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