Browse
Submit Data
Databases
API
Help

Dataset Information

15 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Whole-Genome Sequence of the Endophytic Streptomyces sp. Strain CBMAI 2042, Isolated from Citrus sinensis.

ABSTRACT: The whole-genome sequence of Streptomyces sp. strain CBMAI 2042, an endophytic actinobacterium isolated from Citrus sinensis branches, is described. The strain has the ability to inhibit the growth of Xylella fastidiosa and other human pathogens. In silico analysis highlighted the presence of nonribosomal peptide and polyketide synthases, revealing promising antibiotic assembly lines.

SUBMITTER: Gonzaga de Oliveira L

PROVIDER: S-EPMC6328657 | biostudies-literature | 2019 Jan

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

Whole-Genome Sequence of the Endophytic Streptomyces sp. Strain CBMAI 2042, Isolated from Citrus sinensis.

Gonzaga de Oliveira Luciana L Sigrist Renata R Sachetto Paulo Bruno B Samborskyy Markyian M

Microbiology resource announcements 20190110 2

The whole-genome sequence of Streptomyces sp. strain CBMAI 2042, an endophytic actinobacterium isolated from Citrus sinensis branches, is described. The strain has the ability to inhibit the growth of Xylella fastidiosa and other human pathogens. <i>In silico</i> analysis highlighted the presence of nonribosomal peptide and polyketide synthases, revealing promising antibiotic assembly lines. ...[more]

PMID: 30643884

Similar Datasets

Endophytic Streptomyces sp. CBMAI 2043

Project description:mzMXL files used to create molecular network analysis.

2019-05-30 | MSV000083875 | MassIVE

Draft Genome Sequence of Methylobacterium mesophilicum Strain SR1.6/6, Isolated from Citrus sinensis.

Project description:Methylobacterium mesophilicum strain SR1.6/6 is an endophytic bacterium isolated from a surface-sterilized Citrus sinensis branch. Ecological and biotechnological aspects of this bacterium, such as the genes involved in its association with the host plant and the primary oxidation of methanol, were annotated in the draft genome.

| S-EPMC3707593 | biostudies-literature

Draft Whole-Genome Shotgun Sequence of Streptomyces sp. Strain ETH9427.

Project description:The draft genome of Streptomyces sp. strain ETH9427 was sequenced and assembled into three large scaffolds, a 7.745-Mb linear chromosome with terminal inverted repeats of 201?kb and two probable extrachromosomal elements. Thirty-two biosynthetic gene clusters (BGCs) were identified, out of which four are duplicated in the terminal inverted repeats.

| S-EPMC6256703 | biostudies-literature

Draft Genome Sequence of Streptomyces sp. XY006, an Endophyte Isolated from Tea (Camellia sinensis).

Project description:Streptomyces sp. XY006 is an endophytic bacterium isolated from the young leaf material of the tea plant (Camellia sinensis). The draft genome consists of 8.2 Mb and encodes 7,415 putative open reading frames. This strain is found to contain a high capacity for the production of natural products.

| S-EPMC5597763 | biostudies-literature

Genome sequence data of <i>Streptomyces</i> sp. SS52, an endophytic strain for daidzein biosynthesis.

Project description:We report here the biosynthesis of daidzein in Streptomyces sp. SS52, its genome sequence and the analysis of its genome for finding putative genes involved in daidzein biosynthesis. The Streptomyces sp. SS52 strain was isolated from the plant Phyllanthus urinaria in Tra Vinh province, Vietnam. This endophytic strain is capable of producing the isoflavone daidzein in the culture medium. Streptomyces sp. SS52 possesses a linear genome of 8,184,045 bp and the GC content of this genome is 72.5%. The preliminary genome analysis identified homologs of genes involved in the de novo biosynthesis of daidzein in the genome of Streptomyces sp. SS52. The genome sequencing of Streptomyces sp. SS52 was essential for the study of the biosynthesis of daidzein in Streptomyces bacteria.

| S-EPMC6859222 | biostudies-literature

Draft Genome Sequence of Streptomyces sp. Strain PBH53, Isolated from an Urban Environment.

Project description:We report the draft genome sequence of Streptomyces sp. strain PBH53, a strain isolated from an urban transit station in Ottawa, Canada. The analysis of the genome using the bioinformatics tool antiSMASH showed the presence of many unique natural product biosynthetic pathways.

| S-EPMC4520906 | biostudies-literature

Genome sequence of Streptomyces sp. strain Tu6071.

Project description:Streptomyces sp. Tü6071 is a soil-dwelling bacterium which has a highly active isoprenoid biosynthesis. Isoprenoids are important precursors for biopharmaceutical molecules such as antibiotics or anticancer agents, e.g., landomycin. Streptomyces sp. Tü6071 produces the industrially important terpene glycosides phenalinolactones, which have antibacterial activity against several Gram-positive bacteria. The availability of the genome sequence of Streptomyces sp. Tü6071 allows for understanding the biosynthesis of these pharmaceutical molecules and will facilitate rational genome modification to improve industrial use.

| S-EPMC3147684 | biostudies-literature

Draft Genome Sequence of Streptomyces sp. Strain I05A-00742, Isolated in Shangri-La, China.

Project description:Streptomyces sp. strain I05A-00742 was isolated from a soil sample in Napahai in Shangri-La, Yunnan Province, China. Here, we report the draft genome sequence of Streptomyces sp. I05A-00742, which consists of an assembly size of 7,129,054 bp in 105 scaffolds with a G+C content of 72.43%.

| S-EPMC7317104 | biostudies-literature

Draft Genome Sequence of Streptomyces sp. Strain C8S0, Isolated from a Highly Oligotrophic Sediment.

Project description:Streptomyces spp. are prolific bacteria producing bioactive metabolites. We present the draft genome sequence of Streptomyces sp. strain C8S0, which was isolated from a highly oligotrophic sediment from the Cuatro Cienegas Basin (Mexico). The whole-genome assembly comprised 6,898,902 bp, with 18 biosynthetic gene clusters, including those for nonconventional terpenes, nonribosomal peptides, and polyketides.

| S-EPMC7118189 | biostudies-literature

Genome sequence of Enterobacter sp. strain SP1, an endophytic nitrogen-fixing bacterium isolated from sugarcane.

Project description:Enterobacter sp. strain SP1 is an endophytic nitrogen-fixing bacterium isolated from a sugarcane stem and can promote plant growth. The draft genome sequence of strain SP1 presented here will promote comparative genomic studies to determine the genetic background of interactions between endophytic enterobacteria and plants.

| S-EPMC3510633 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data