CaImAn an open source tool for scalable calcium imaging data analysis.
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ABSTRACT:
SUBMITTER: Giovannucci A
PROVIDER: S-EPMC6342523 | biostudies-literature | 2019 Jan
REPOSITORIES: biostudies-literature
Publications
CaImAn an open source tool for scalable calcium imaging data analysis.
Giovannucci Andrea A Friedrich Johannes J Gunn Pat P Kalfon Jérémie J Brown Brandon L BL Koay Sue Ann SA Taxidis Jiannis J Najafi Farzaneh F Gauthier Jeffrey L JL Zhou Pengcheng P Khakh Baljit S BS Tank David W DW Chklovskii Dmitri B DB Pnevmatikakis Eftychios A EA
eLife 20190117
Advances in fluorescence microscopy enable monitoring larger brain areas in-vivo with finer time resolution. The resulting data rates require reproducible analysis pipelines that are reliable, fully automated, and scalable to datasets generated over the course of months. We present CaImAn, an open-source library for calcium imaging data analysis. CaImAn provides automatic and scalable methods to address problems common to pre-processing, including motion correction, neural activity identificatio ...[more]
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