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Data on rare earth elements in mining environments under non-acidic conditions.

ABSTRACT: This article contains analytical data on Rare Earth Elements (REE) concentration in waters and solid samples (mining wastes and biominerals) collected in an abandoned mining site characterized by near-neutral conditions, and they are related with the research article "Geochemistry of rare earth elements in water and solid materials at abandoned mines in SW Sardinia (Italy)" (Medas et al., 2013). REE can show specific signatures due to fractionation processes, giving an insight to the understanding of the natural processes ruling the water-rock interactions and the geo-bio-interactions. Most researches on REE behavior were performed in acidic environments, while only few data on REE are available for neutral waters. Elaboration of this dataset can be useful to evaluate the reactions controlling the geochemical behavior of REE under near-neutral to slightly alkaline conditions, driving the scientific community toward an efficient management of monitoring actions and remediation technologies.

SUBMITTER: Medas D

PROVIDER: S-EPMC6348289 | biostudies-literature | 2019 Feb

REPOSITORIES: biostudies-literature

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Data on rare earth elements in mining environments under non-acidic conditions.

Medas Daniela D Cidu Rosa R De Giudici Giovanni G Podda Francesca F

Data in brief 20181221

This article contains analytical data on Rare Earth Elements (REE) concentration in waters and solid samples (mining wastes and biominerals) collected in an abandoned mining site characterized by near-neutral conditions, and they are related with the research article "Geochemistry of rare earth elements in water and solid materials at abandoned mines in SW Sardinia (Italy)" (Medas et al., 2013). REE can show specific signatures due to fractionation processes, giving an insight to the understandi ...[more]

PMID: 30705928

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Project description:The effect of acidity and relative humidity on bulk isoprene aerosol parameters has been investigated in several studies; however, few measurements have been conducted on individual aerosol compounds. The focus of this study has been the examination of the effect of acidity and relative humidity on secondary organic aerosol (SOA) chemical composition from isoprene photooxidation in the presence of nitrogen oxide (NO x ). A detailed characterization of SOA at the molecular level was also investigated. Experiments were conducted in a 14.5 m3 smog chamber operated in flow mode. Based on a detailed analysis of mass spectra obtained from gas chromatography-mass spectrometry of silylated derivatives in electron impact and chemical ionization modes, ultra-high performance liquid chromatography/electrospray ionization/time-of-flight high-resolution mass spectrometry, and collision-induced dissociation in the negative ionization modes, we characterized not only typical isoprene products but also new oxygenated compounds. A series of nitroxy-organosulfates (NOSs) were tentatively identified on the basis of high-resolution mass spectra. Under acidic conditions, the major identified compounds include 2-methyltetrols (2MT), 2-methylglyceric acid (2mGA), and 2MT-OS. Other products identified include epoxydiols, mono- and dicarboxylic acids, other organic sulfates, and nitroxy- and nitrosoxy-OS. The contribution of SOA products from isoprene oxidation to PM2.5 was investigated by analyzing ambient aerosol collected at rural sites in Poland. Methyltetrols, 2mGA, and several organosulfates and nitroxy-OS were detected in both the field and laboratory samples. The influence of relative humidity on SOA formation was modest in non-acidic-seed experiments and stronger under acidic seed aerosol. Total secondary organic carbon decreased with increasing relative humidity under both acidic and non-acidic conditions. While the yields of some of the specific organic compounds decreased with increasing relative humidity, others varied in an indeterminate manner from changes in the relative humidity.

Project description:Background: Rare Earth Elements (REEs) control methanol utilization in both methane- and methanol-utilizing microbes. It has been established that the addition of REEs leads to the transcriptional repression of MxaFI-MeDH [a two-subunit methanol dehydrogenase (MeDH), calcium-dependent] and the activation of XoxF-MeDH (a one-subunit MeDH, lanthanum-dependent). Both enzymes are pyrroquinoline quinone-dependent alcohol dehydrogenases and show significant homology; however, they display different kinetic properties and substrate specificities. This study investigates the impact of the MxaFI to XoxF switch on the behavior of metabolic networks at a global scale. Results: In this study we investigated the steady-state growth of Methylomicrobium alcaliphilum 20ZR in media containing calcium (Ca) or lanthanum (La, a REE element). We found that cells supplemented with La show a higher growth rate compared to Ca-cultures; however, the efficiency of carbon conversion, estimated as biomass yield, is higher in cells grown with Ca. Three complementary global-omics approaches-RNA-seq transcriptomics, proteomics, and metabolomics-were applied to investigate the mechanisms of improved growth vs. carbon conversion. Cells grown with La showed the transcriptional activation of the xoxF gene, a homolog of the formaldehyde-activating enzyme (fae2), a putative transporter, genes for hemin-transport proteins, and nitrate reductase. In contrast, genes for mxaFI and associated cytochrome (mxaG) expression were downregulated. Proteomic profiling suggested additional adjustments of the metabolic network at the protein level, including carbon assimilation pathways, electron transport systems, and the tricarboxylic acid (TCA) cycle. Discord between gene expression and protein abundance changes points toward the possibility of post-transcriptional control of the related systems including key enzymes of the TCA cycle and a set of electron-transport carriers. Metabolomic data followed proteomics and showed the reduction of the ribulose-monophosphate (RuMP) pathway intermediates and the increase of the TCA cycle metabolites. Conclusion: Cells exposed to REEs display higher rates of growth but have lower carbon conversion efficiency compared to cells supplemented with Ca. The most plausible explanation for these physiological changes is an increased conversion of methanol into formate by XoxF-MeDH, which further stimulates methane oxidation but limits both the supply of reducing power and flux of formaldehyde into the RuMP pathway.

Dataset Information

Data on rare earth elements in mining environments under non-acidic conditions.

Publications

Data on rare earth elements in mining environments under non-acidic conditions.

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