Browse
Submit Data
Databases
API
Help

Dataset Information

25 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Complete Genome Sequence of Lactobacillus reuteri PNW1, a Promising Probiotic Candidate.

ABSTRACT: This study reports the whole-genome sequence of Lactobacillus reuteri PNW1 isolated from gastrointestinal tracts of weaned piglets of the indigenous South African Windsnyer pig breed. A total of 5.2 GB data comprising 8,209,104 paired-end reads were generated. The assembled genome is 2,430,215?bp long in 420 contigs with 39% G+C content.

SUBMITTER: Alayande KA

PROVIDER: S-EPMC6386563 | biostudies-literature | 2019 Feb

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

Complete Genome Sequence of Lactobacillus reuteri PNW1, a Promising Probiotic Candidate.

Alayande Kazeem A KA Aiyegoro Olayinka A OA Ateba Collins N CN

Microbiology resource announcements 20190221 8

This study reports the whole-genome sequence of Lactobacillus reuteri PNW1 isolated from gastrointestinal tracts of weaned piglets of the indigenous South African Windsnyer pig breed. A total of 5.2 GB data comprising 8,209,104 paired-end reads were generated. The assembled genome is 2,430,215 bp long in 420 contigs with 39% G+C content. ...[more]

PMID: 30834362

Similar Datasets

Complete genome sequence of functional probiotic candidate <i>Lactobacillus amylovorus</i> CACC736.

Project description:Lactobacillus amylovorus CACC736 was originated from swine feces in Korea. The complete genome sequences of the strain contained one circular chromosome (2,057,809 base pair [bp]) with 38.2% guanine-cytosine (GC) content and two circular plasmids, namely, pCACC736-1 and pCACC736-2. The predicted protein-coding genes, which are encoding the clustered regularly interspaced short palindromic repeats (CRISPR)-associated proteins, biosynthesis of bacteriocin (helveticin J), and the related proteins of the bile, acid tolerance. Notably, the genes related to vitamin B-group biosynthesis (riboflavin and cobalamin) were also found in L. amylovorus CACC736. Collectively, the complete genome sequence of the L. amylovorus CACC736 will aid in the development of functional probiotics in the animal industry.

| S-EPMC10119451 | biostudies-literature

Complete Genome Sequence of Lactobacillus acidophilus LA-10A, a Promising Probiotic Strain Isolated from Fermented Mare's Milk.

Project description:This report describes the whole-genome sequence of Lactobacillus acidophilus LA-10A, isolated from fermented mare's milk. This strain has been widely consumed due to its excellent performance in the treatment and prevention of Helicobacter pylori infection. The genome sequence of LA-10A provides further molecular information about its features.

| S-EPMC9202371 | biostudies-literature

Complete Genome Sequence of the Probiotic Strain Lactobacillus salivarius LPM01.

Project description:Lactobacillus salivarius LPM01 (DSM 22150) is a probiotic strain able to improve health status in immunocompromised people. Here, we report its complete genome sequence deciphered by PacBio single-molecule real-time (SMRT) technology. Analysis of the sequence may provide insights into its functional activity and safety assessment.

| S-EPMC5122687 | biostudies-literature

Complete Genome Sequence of Probiotic Strain Lactobacillus acidophilus La-14.

Project description:We present the 1,991,830-bp complete genome sequence of Lactobacillus acidophilus strain La-14 (SD-5212). Comparative genomic analysis revealed 99.98% similarity overall to the L. acidophilus NCFM genome. Globally, 111 single nucleotide polymorphisms (SNPs) (95 SNPs, 16 indels) were observed throughout the genome. Also, a 416-bp deletion in the LA14_1146 sugar ABC transporter was identified.

| S-EPMC3707595 | biostudies-literature

Complete genome sequence of the probiotic Lactobacillus casei strain BL23.

Project description:The entire genome of Lactobacillus casei BL23, a strain with probiotic properties, has been sequenced. The genomes of BL23 and the industrially used probiotic strain Shirota YIT 9029 (Yakult) seem to be very similar.

| S-EPMC2863562 | biostudies-literature

Complete genome sequence of the probiotic Lactobacillus plantarum ST-III.

Project description:Lactobacillus plantarum strain ST-III, a probiotic strain with several functions, was isolated from kimchi. Here we report the complete genome sequence of ST-III and compared it with two published L. plantarum genomes.

| S-EPMC3019943 | biostudies-literature

Complete genome sequence of the probiotic Lactobacillus rhamnosus ATCC 53103.

Project description:Lactobacillus rhamnosus is a facultatively heterofermentative lactic acid bacterium and is frequently isolated from human gastrointestinal mucosa of healthy individuals. L. rhamnosus ATCC 53103, isolated from a healthy human intestinal flora, is one of the most widely used and well-documented probiotics. Here, we report the finished and annotated genome sequence of this organism.

| S-EPMC2786603 | biostudies-literature

Complete genome sequence of the probiotic Lactobacillus plantarum strain ZJ316.

Project description:Lactobacillus plantarum strain ZJ316, a probiotic strain with several functions, was isolated from healthy newborn infant fecal samples. Here we report the finished and annotated genome sequence of this organism.

| S-EPMC3623005 | biostudies-literature

Complete genome sequence of the probiotic bacterium Lactobacillus casei LC2W.

Project description:Lactobacillus casei LC2W, a patented probiotic strain (Z. Wu, European patent EP 1642963 B1, February 2009), has been isolated from Chinese traditional dairy products and implemented in industrial production as starter culture. Here we present the complete genome sequence of LC2W and the identification of a gene cluster implicated in the biosynthesis of exopolysaccharides.

| S-EPMC3133282 | biostudies-literature

Complete Genome Sequence of the Probiotic Strain Lactobacillus casei (Formerly Lactobacillus paracasei) LOCK919.

Project description:Lactobacillus casei is usually regarded as a bacterium that lives naturally in the human intestinal tract, where it can contribute to host health and well-being. We describe here the complete genome sequence of L. casei LOCK919, a strain with probiotic properties isolated from child feces. The genome consists of a 3.11-Mb chromosome and a 29,768-bp plasmid.

| S-EPMC3784782 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data