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Genomic and metagenomic signatures of giant viruses are ubiquitous in water samples from sewage, inland lake, waste water treatment plant, and municipal water supply in Mumbai, India.

ABSTRACT: We report the detection of genomic signatures of giant viruses (GVs) in the metagenomes of three environment samples from Mumbai, India, namely, a pre-filter of a household water purifier, a sludge sample from wastewater treatment plant (WWTP), and a drying bed sample of the same WWTP. The de novo assembled contigs of each sample yielded 700 to 2000 maximum unique matches with the GV genomic database. In all three samples, the maximum number of reads aligned to Pandoraviridae, followed by Phycodnaviridae, Mimiviridae, Iridoviridae, and other Megaviruses. We also isolated GVs from every environmental sample (n?=?20) we tested using co-culture of the sample with Acanthomoeba castellanii. From this, four randomly selected GVs were subjected to the genomic characterization that showed remarkable cladistic homology with the three GV families viz., Mimivirirdae (Mimivirus Bombay [MVB]), Megaviruses (Powai lake megavirus [PLMV] and Bandra megavius [BAV]), and Marseilleviridae (Kurlavirus [KV]). All 4 isolates exhibited remarkable genomic identity with respective GV families. Functionally, the genomes were indistinguishable from other previously reported GVs, encoding nearly all COGs across extant family members. Further, the uncanny genomic homogeneity exhibited by individual GV families across distant geographies indicate their yet to be ascertained ecological significance.

SUBMITTER: Chatterjee A

PROVIDER: S-EPMC6403294 | biostudies-literature | 2019 Mar

REPOSITORIES: biostudies-literature

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Genomic and metagenomic signatures of giant viruses are ubiquitous in water samples from sewage, inland lake, waste water treatment plant, and municipal water supply in Mumbai, India.

Chatterjee Anirvan A Sicheritz-Pontén Thomas T Yadav Rajesh R Kondabagil Kiran K

Scientific reports 20190306 1

We report the detection of genomic signatures of giant viruses (GVs) in the metagenomes of three environment samples from Mumbai, India, namely, a pre-filter of a household water purifier, a sludge sample from wastewater treatment plant (WWTP), and a drying bed sample of the same WWTP. The de novo assembled contigs of each sample yielded 700 to 2000 maximum unique matches with the GV genomic database. In all three samples, the maximum number of reads aligned to Pandoraviridae, followed by Phycod ...[more]

PMID: 30842490

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Project description:Following the nuclear accident at the Fukushima Daiichi Nuclear Power Plant in 2011, even the municipal solid waste (MSW) and sewage sludge (SS) in northeastern Japan became contaminated by radioactive nuclides such as 137Cs and 134Cs. To understand the state of radioactive cesium (r-Cs) in the incineration residues of the municipal wastes, research groups studied the concentration and the chemical form of r-Cs in the residues, as well as its water-leaching behavior. In the present study, we conducted thermodynamic equilibrium calculations to estimate the possible chemical forms of r-Cs in the incineration residues. Thermodynamic data for cesium oxides and aluminosilicates were collected and compiled into a new database to perform equilibrium calculations for systems that include Cs. The calculation results suggested that Cs (radiocesium and stable cesium) in municipal solid waste was transformed into gaseous CsCl or crystalline aluminosilicate at incineration temperatures and, when a molten aluminosilicate phase (i.e., slag phase) was generated, a proportion of the Cs species was dissolved into the slag phase. In the case of sewage sludge, Cs was calculated to be transformed mostly into crystalline aluminosilicate at incineration temperatures, whereas by analogy with the behaviors of Na and K, Ca,Cs-phosphate double salts were also potential incineration products. These results could account for the high leaching rates of r-Cs from the MSW incineration fly ash and the low leaching rates from the MSW incineration bottom ash and SS incineration fly ash reported in earlier studies. In the case of dewatered SS that included a large amount of slaked lime as a flocculant, it was exceptionally difficult for the calculation to represent the fate of Cs, and we needed to include the contribution of silica sand in a fluidized-bed combustor in the equilibrium calculation to represent the low leaching rates of alkali species from the dewatered SS fly ash. From the results of the thermodynamic equilibrium calculations and also from the calculated standard Gibbs energy of cesium aluminosilicate formation/decomposition reactions, the effects of waste composition and incineration temperature on the fate of Cs were examined: High incineration temperature and large amounts of Ca and Cl in the waste composition increased the fraction of gaseous CsCl in the furnace and thus resulted in the high distribution ratios of Cs in the fly ash of MSW and the high leaching rates of Cs from the fly ash.

Project description:BackgroundPretreatment is necessary to reduce biomass recalcitrance and enhance the efficiency of enzymatic saccharification for biofuel production. Ionic liquid (IL) pretreatment has gained a significant interest as a pretreatment process that can reduce cellulose crystallinity and remove lignin, key factors that govern enzyme accessibility. There are several challenges that need to be addressed for IL pretreatment to become viable for commercialization, including IL cost and recyclability. In addition, it is unclear whether ILs can maintain process performance when utilizing low-cost, low-quality biomass feedstocks such as the paper fraction of municipal solid waste (MSW), which are readily available in high quantities. One approach to potentially reduce IL cost is to use a blend of ILs at different concentrations in aqueous mixtures. Herein, we describe 14 IL-water systems with mixtures of 1-ethyl-3-ethylimidazolium acetate ([C2C1Im][OAc]), 1-butyl-3-ethylimidazolium acetate ([C4C1Im][OAc]), and water that were used to pretreat MSW blended with agave bagasse (AGB). The detailed analysis of IL recycling in terms of sugar yields of pretreated biomass and IL stability was examined.ResultsBoth biomass types (AGB and MSW) were efficiently disrupted by IL pretreatment. The pretreatment efficiency of [C2C1Im][OAc] and [C4C1Im][OAc] decreased when mixed with water above 40%. The AGB/MSW (1:1) blend demonstrated a glucan conversion of 94.1 and 83.0% using IL systems with ~10 and ~40% water content, respectively. Chemical structures of fresh ILs and recycle ILs presented strong similarities observed by FTIR and 1H-NMR spectroscopy. The glucan and xylan hydrolysis yields obtained from recycled IL exhibited a slight decrease in pretreatment efficiency (less than 10% in terms of hydrolysis yields compared to that of fresh IL), and a decrease in cellulose crystallinity was observed.ConclusionsOur results demonstrated that mixing ILs such as [C2C1Im][OAc] and [C4C1Im][OAc] and blending the paper fraction of MSW with agricultural residues, such as AGB, may contribute to lower the production costs while maintaining high sugar yields. Recycled IL-water mixtures provided comparable results to that of fresh ILs. Both of these results offer the potential of reducing the production costs of sugars and biofuels at biorefineries as compared to more conventional IL conversion technologies.Graphical abstractSchematic of ionic liquid (IL) pretreatment of agave bagasse (AB) and paper-rich fraction of municipal solid waste (MSW).

Dataset Information

Genomic and metagenomic signatures of giant viruses are ubiquitous in water samples from sewage, inland lake, waste water treatment plant, and municipal water supply in Mumbai, India.

Publications

Genomic and metagenomic signatures of giant viruses are ubiquitous in water samples from sewage, inland lake, waste water treatment plant, and municipal water supply in Mumbai, India.

Similar Datasets

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