Dataset Information

Breast Microcalcification Diagnosis Using Deep Convolutional Neural Network from Digital Mammograms.

ABSTRACT: Mammography is successfully used as an effective screening tool for cancer diagnosis. A calcification cluster on mammography is a primary sign of cancer. Early researches have proved the diagnostic value of the calcification, yet their performance is highly dependent on handcrafted image descriptors. Characterizing the calcification mammography in an automatic and robust way remains a challenge. In this paper, the calcification was characterized by descriptors obtained from deep learning and handcrafted descriptors. We compared the performances of different image feature sets on digital mammograms. The feature sets included the deep features alone, the handcrafted features, their combination, and the filtered deep features. Experimental results have demonstrated that the deep features outperform handcrafted features, but the handcrafted features can provide complementary information for deep features. We achieved a classification precision of 89.32% and sensitivity of 86.89% using the filtered deep features, which is the best performance among all the feature sets.

SUBMITTER: Cai H

PROVIDER: S-EPMC6421727 | biostudies-literature | 2019

REPOSITORIES: biostudies-literature

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Breast Microcalcification Diagnosis Using Deep Convolutional Neural Network from Digital Mammograms.

Cai Hongmin H Huang Qinjian Q Rong Wentao W Song Yan Y Li Jiao J Wang Jinhua J Chen Jiazhou J Li Li L

Computational and mathematical methods in medicine 20190303

Mammography is successfully used as an effective screening tool for cancer diagnosis. A calcification cluster on mammography is a primary sign of cancer. Early researches have proved the diagnostic value of the calcification, yet their performance is highly dependent on handcrafted image descriptors. Characterizing the calcification mammography in an automatic and robust way remains a challenge. In this paper, the calcification was characterized by descriptors obtained from deep learning and han ...[more]

PMID: 30944574

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Project description:Several computer aided diagnosis (CAD) systems have been developed for mammography. They are widely used in certain countries such as the U.S. where mammography studies are conducted more frequently; however, they are not yet globally employed for clinical use due to their inconsistent performance, which can be attributed to their reliance on hand-crafted features. It is difficult to use hand-crafted features for mammogram images that vary due to factors such as the breast density of patients and differences in imaging devices. To address these problems, several studies have leveraged a deep convolutional neural network that does not require hand-crafted features. Among the recent object detectors, RetinaNet is particularly promising as it is a simpler one-stage object detector that is fast and efficient while achieving state-of-the-art performance. RetinaNet has been proven to perform conventional object detection tasks but has not been tested on detecting masses in mammograms. Thus, we propose a mass detection model based on RetinaNet. To validate its performance in diverse use cases, we construct several experimental setups using the public dataset INbreast and the in-house dataset GURO. In addition to training and testing on the same dataset (i.e., training and testing on INbreast), we evaluate our mass detection model in setups using additional training data (i.e., training on INbreast + GURO and testing on INbreast). We also evaluate our model in setups using pre-trained weights (i.e., using weights pre-trained on GURO, training and testing on INbreast). In all the experiments, our mass detection model achieves comparable or better performance than more complex state-of-the-art models including the two-stage object detector. Also, the results show that using the weights pre-trained on datasets achieves similar performance as directly using datasets in the training phase. Therefore, we make our mass detection model's weights pre-trained on both GURO and INbreast publicly available. We expect that researchers who train RetinaNet on their in-house dataset for the mass detection task can use our pre-trained weights to leverage the features extracted from the datasets.

Project description:BackgroundThe detection of masses on mammogram represents one of the earliest signs of a malignant breast cancer. However, masses may be hard to detect due to dense breast tissue, leading to false negative results. In this study, we aimed to explore the clinical application of the convolutional neural network (CNN)-based deep learning (DL) system constructed in our previous work as an objective and accurate tool for breast cancer screening and diagnosis in Asian women.MethodsThis retrospective analysis included 324 patients with masses detected on mammograms at Shenzhen People's Hospital between April and December 2019. (I) Detection: images were independently analyzed by two junior radiologists who were blinded to relative results. Then, a senior radiologist analyzed the images after reviewing all the relevant information as the reference. (II) Classification: masses were classified by the same two junior radiologists and in consensus by two other seniors. Images were also input into the DL system. The sensitivity of detection by junior radiologists and the DL system, effects of different factors [breast density; patient age; morphology, margin, size, breast imaging reporting and data system (BI-RADS) category of the mass] on detection, the accuracy, sensitivity, and specificity of classification, and the area under the receiver operating characteristic (ROC) curve (AUC), were evaluated.ResultsA total of 618 masses were detected. The detection sensitivity of the two junior radiologists [78.0% (482/618) and 84.0% (519/618), respectively] was lower than that of the DL system [86.2% (533/618)]. Breast density significantly affected the detection by two junior radiologists (both P=0.030), but not by the DL system (P=0.385). The AUC for classifying masses as negative (BI-RADS 1, 2, 3) or positive (BI-RADS 4A, 4B, 4C, 5) for the DL system was significantly higher compared to those of the two junior radiologists, but not significantly different compared to seniors [DL system, 0.697; junior, 0.612 and 0.620 (P=0.021, 0.019); senior in consensus, 0.748 (P=0.071)].ConclusionsThe CNN-based DL system could assist junior radiologists in improving mass detection and is not affected by breast density. This DL system may have clinical utility in women with dense breasts, including reducing the impact caused by inexperienced radiologists and the potential for missed diagnoses.

Project description:OBJECTIVES:To develop a proof-of-concept "interpretable" deep learning prototype that justifies aspects of its predictions from a pre-trained hepatic lesion classifier. METHODS:A convolutional neural network (CNN) was engineered and trained to classify six hepatic tumor entities using 494 lesions on multi-phasic MRI, described in Part 1. A subset of each lesion class was labeled with up to four key imaging features per lesion. A post hoc algorithm inferred the presence of these features in a test set of 60 lesions by analyzing activation patterns of the pre-trained CNN model. Feature maps were generated that highlight regions in the original image that correspond to particular features. Additionally, relevance scores were assigned to each identified feature, denoting the relative contribution of a feature to the predicted lesion classification. RESULTS:The interpretable deep learning system achieved 76.5% positive predictive value and 82.9% sensitivity in identifying the correct radiological features present in each test lesion. The model misclassified 12% of lesions. Incorrect features were found more often in misclassified lesions than correctly identified lesions (60.4% vs. 85.6%). Feature maps were consistent with original image voxels contributing to each imaging feature. Feature relevance scores tended to reflect the most prominent imaging criteria for each class. CONCLUSIONS:This interpretable deep learning system demonstrates proof of principle for illuminating portions of a pre-trained deep neural network's decision-making, by analyzing inner layers and automatically describing features contributing to predictions. KEY POINTS:• An interpretable deep learning system prototype can explain aspects of its decision-making by identifying relevant imaging features and showing where these features are found on an image, facilitating clinical translation. • By providing feedback on the importance of various radiological features in performing differential diagnosis, interpretable deep learning systems have the potential to interface with standardized reporting systems such as LI-RADS, validating ancillary features and improving clinical practicality. • An interpretable deep learning system could potentially add quantitative data to radiologic reports and serve radiologists with evidence-based decision support.

Dataset Information

Breast Microcalcification Diagnosis Using Deep Convolutional Neural Network from Digital Mammograms.

Publications

Breast Microcalcification Diagnosis Using Deep Convolutional Neural Network from Digital Mammograms.

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