Dataset Information

GridLoc: An automatic and unsupervised localization method for high-density ECoG grids.

ABSTRACT: Precise localization of electrodes is essential in the field of high-density (HD) electrocorticography (ECoG) brain signal analysis in order to accurately interpret the recorded activity in relation to functional anatomy. Current localization methods for subchronically implanted HD electrode grids involve post-operative imaging. However, for situations where post-operative imaging is not available, such as during acute measurements in awake surgery, electrode localization is complicated. Intra-operative photographs may be informative, but not for electrode grids positioned partially or fully under the skull. Here we present an automatic and unsupervised method to localize HD electrode grids that does not require post-operative imaging. The localization method, named GridLoc, is based on the hypothesis that the anatomical and vascular brain structures under the ECoG electrodes have an effect on the amplitude of the recorded ECoG signal. More specifically, we hypothesize that the spatial match between resting-state high-frequency band power (45-120?Hz) patterns over the grid and the anatomical features of the brain under the electrodes, such as the presence of sulci and larger blood vessels, can be used for adequate HD grid localization. We validate this hypothesis and compare the GridLoc results with electrode locations determined with post-operative imaging and/or photographs in 8 patients implanted with HD-ECoG grids. Locations agreed with an average difference of 1.94?±?0.11?mm, which is comparable to differences reported earlier between post-operative imaging and photograph methods. The results suggest that resting-state high-frequency band activity can be used for accurate localization of HD grid electrodes on a pre-operative MRI scan and that GridLoc provides a convenient alternative to methods that rely on post-operative imaging or intra-operative photographs.

SUBMITTER: Branco MP

PROVIDER: S-EPMC6433235 | biostudies-literature | 2018 Oct

REPOSITORIES: biostudies-literature

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Publications

GridLoc: An automatic and unsupervised localization method for high-density ECoG grids.

Branco Mariana P MP Leibbrand Michael M Vansteensel Mariska J MJ Freudenburg Zachary V ZV Ramsey Nick F NF

NeuroImage 20180618

Precise localization of electrodes is essential in the field of high-density (HD) electrocorticography (ECoG) brain signal analysis in order to accurately interpret the recorded activity in relation to functional anatomy. Current localization methods for subchronically implanted HD electrode grids involve post-operative imaging. However, for situations where post-operative imaging is not available, such as during acute measurements in awake surgery, electrode localization is complicated. Intra-o ...[more]

PMID: 29920373

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Project description:High-density microelectrode arrays can be used to record extracellular action potentials from hundreds to thousands of neurons simultaneously. Efficient spike sorters must be developed to cope with such large data volumes. Most existing spike sorting methods for single electrodes or small multielectrodes, however, suffer from the "curse of dimensionality" and cannot be directly applied to recordings with hundreds of electrodes. This holds particularly true for the standard reference spike sorting algorithm, principal component analysis-based feature extraction, followed by k-means or expectation maximization clustering, against which most spike sorters are evaluated. We present a spike sorting algorithm that circumvents the dimensionality problem by sorting local groups of electrodes independently with classical spike sorting approaches. It is scalable to any number of recording electrodes and well suited for parallel computing. The combination of data prewhitening before the principal component analysis-based extraction and a parameter-free clustering algorithm obviated the need for parameter adjustments. We evaluated its performance using surrogate data in which we systematically varied spike amplitudes and spike rates and that were generated by inserting template spikes into the voltage traces of real recordings. In a direct comparison, our algorithm could compete with existing state-of-the-art spike sorters in terms of sensitivity and precision, while parameter adjustment or manual cluster curation was not required. NEW & NOTEWORTHY We present an automatic spike sorting algorithm that combines three strategies to scale classical spike sorting techniques for high-density microelectrode arrays: 1) splitting the recording electrodes into small groups and sorting them independently; 2) clustering a subset of spikes and classifying the rest to limit computation time; and 3) prewhitening the spike waveforms to enable the use of parameter-free clustering. Finally, we combined these strategies into an automatic spike sorter that is competitive with state-of-the-art spike sorters.

Project description:ObjectiveA fundamental goal of the auditory system is to parse the auditory environment into distinct perceptual representations. Auditory perception is mediated by the ventral auditory pathway, which includes the ventrolateral prefrontal cortex (vlPFC). Because large-scale recordings of auditory signals are quite rare, the spatiotemporal resolution of the neuronal code that underlies vlPFC's contribution to auditory perception has not been fully elucidated. Therefore, we developed a modular, chronic, high-resolution, multi-electrode array system with long-term viability in order to identify the information that could be decoded from ?ECoG vlPFC signals.ApproachWe molded three separate ?ECoG arrays into one and implanted this system in a non-human primate. A custom 3D-printed titanium chamber was mounted on the left hemisphere. The molded 294-contact ?ECoG array was implanted subdurally over the vlPFC. ?ECoG activity was recorded while the monkey participated in a 'hearing-in-noise' task in which they reported hearing a 'target' vocalization from a background 'chorus' of vocalizations. We titrated task difficulty by varying the sound level of the target vocalization, relative to the chorus (target-to-chorus ratio, TCr).Main resultsWe decoded the TCr and the monkey's behavioral choices from the ?ECoG signal. We analyzed decoding accuracy as a function of number of electrodes, spatial resolution, and time from implantation. Over a one-year period, we found significant decoding with individual electrodes that increased significantly as we decoded simultaneously more electrodes. Further, we found that the decoding for behavioral choice was better than the decoding of TCr. Finally, because the decoding accuracy of individual electrodes varied on a day-by-day basis, electrode arrays with high channel counts ensure robust decoding in the long term.SignificanceOur results demonstrate the utility of high-resolution and high-channel-count, chronic µECoG recording. We developed a surface electrode array that can be scaled to cover larger cortical areas without increasing the chamber footprint.

Dataset Information

GridLoc: An automatic and unsupervised localization method for high-density ECoG grids.

Publications

GridLoc: An automatic and unsupervised localization method for high-density ECoG grids.

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