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Optimal contrast analysis with heterogeneous variances and budget concerns.

ABSTRACT: The omnibus test is commonly applied to evaluate the overall disparity between group means in ANOVA. Alternatively, linear contrasts are more informative in detecting specific pattern of mean differences that cannot be obtained via the omnibus test. This article concerns power and sample size calculations for contrast analysis with heterogeneous variances and budget concerns. Optimal allocation procedures for the Welch-Satterthwaite tests of standardized and unstandardized contrasts are presented to minimize the total sample size with the designated ratios, to meet a desirable power level for the least cost, and to attain the maximum power performance under a fixed cost. Currently available methods rely exclusively on simple allocation formula and direct rounding rule. The proposed allocation strategies combine the computing techniques of nonlinear optimization search and iterative screening process. Numerical assessments of a randomized control trial for the overcoming depression on the Internet are conducted to demonstrate and confirm that the approximate procedures do not guarantee optimal solution. The suggested approaches extend and outperform the existing findings in methodological soundness and overall performance. The corresponding computer algorithms are developed to implement the recommended power and sample size calculations for optimal contrast analysis.

SUBMITTER: Jan SL

PROVIDER: S-EPMC6435144 | biostudies-literature | 2019

REPOSITORIES: biostudies-literature

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Optimal contrast analysis with heterogeneous variances and budget concerns.

Jan Show-Li SL Shieh Gwowen G

PloS one 20190326 3

The omnibus test is commonly applied to evaluate the overall disparity between group means in ANOVA. Alternatively, linear contrasts are more informative in detecting specific pattern of mean differences that cannot be obtained via the omnibus test. This article concerns power and sample size calculations for contrast analysis with heterogeneous variances and budget concerns. Optimal allocation procedures for the Welch-Satterthwaite tests of standardized and unstandardized contrasts are presente ...[more]

PMID: 30913244

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Project description:Conventional functional magnetic resonance imaging (FMRI) group analysis makes two key assumptions that are not always justified. First, the data from each subject is condensed into a single number per voxel, under the assumption that within-subject variance for the effect of interest is the same across all subjects or is negligible relative to the cross-subject variance. Second, it is assumed that all data values are drawn from the same Gaussian distribution with no outliers. We propose an approach that does not make such strong assumptions, and present a computationally efficient frequentist approach to FMRI group analysis, which we term mixed-effects multilevel analysis (MEMA), that incorporates both the variability across subjects and the precision estimate of each effect of interest from individual subject analyses. On average, the more accurate tests result in higher statistical power, especially when conventional variance assumptions do not hold, or in the presence of outliers. In addition, various heterogeneity measures are available with MEMA that may assist the investigator in further improving the modeling. Our method allows group effect t-tests and comparisons among conditions and among groups. In addition, it has the capability to incorporate subject-specific covariates such as age, IQ, or behavioral data. Simulations were performed to illustrate power comparisons and the capability of controlling type I errors among various significance testing methods, and the results indicated that the testing statistic we adopted struck a good balance between power gain and type I error control. Our approach is instantiated in an open-source, freely distributed program that may be used on any dataset stored in the universal neuroimaging file transfer (NIfTI) format. To date, the main impediment for more accurate testing that incorporates both within- and cross-subject variability has been the high computational cost. Our efficient implementation makes this approach practical. We recommend its use in lieu of the less accurate approach in the conventional group analysis.

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Optimal contrast analysis with heterogeneous variances and budget concerns.

Publications

Optimal contrast analysis with heterogeneous variances and budget concerns.

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