Browse
Submit Data
Databases
API
Help

Dataset Information

28 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Draft Genome Sequence of Phocine Herpesvirus 1 Isolated from the Brain of a Harbor Seal.

ABSTRACT: Phocine herpesvirus 1 (PhHV-1) is a viral pathogen with high prevalence, morbidity, and mortality in harbor seals. In this study, we used a metagenomic approach to assemble the PhHV-1 genome from the brain tissue of a harbor seal. Here, we present a 119-kb draft genome of PhHV-1 comprising 76 open reading frames.

SUBMITTER: Rosales SM

PROVIDER: S-EPMC6449559 | biostudies-literature | 2019 Apr

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

Draft Genome Sequence of Phocine Herpesvirus 1 Isolated from the Brain of a Harbor Seal.

Rosales Stephanie M SM Vega Thurber Rebecca R

Microbiology resource announcements 20190404 14

Phocine herpesvirus 1 (PhHV-1) is a viral pathogen with high prevalence, morbidity, and mortality in harbor seals. In this study, we used a metagenomic approach to assemble the PhHV-1 genome from the brain tissue of a harbor seal. Here, we present a 119-kb draft genome of PhHV-1 comprising 76 open reading frames. ...[more]

PMID: 30948468

Similar Datasets

Complete Genome Sequence of Phocine Distemper Virus Isolated from a Harbor Seal (Phoca vitulina) during the 1988 North Sea Epidemic.

Project description:Phocine distemper virus (PDV) was identified as the cause of a large morbillivirus outbreak among harbor seals in the North Sea in 1988. PDV is a member of the family Paramyxoviridae, genus Morbillivirus. Until now, no full-genome sequence of PDV has been available.

| S-EPMC3695424 | biostudies-literature

Complete Genome Sequence of Arcanobacterium sp. Strain 2701, Isolated from a Harbor Seal.

Project description:Arcanobacterium spp. are Gram-positive bacteria which can be found in a wide range of hosts and can be associated with disease in humans and animals. Here, we announce the complete genome sequence of Arcanobacterium sp. strain 2701, isolated from a harbor seal from the North Sea.

| S-EPMC7498426 | biostudies-literature

Complete Genome Sequence of Arcanobacterium phocisimile Strain DSM 26142, Isolated from a Harbor Seal.

Project description:Bacteria of the genus Arcanobacterium can be found in a variety of hosts. The species Arcanobacterium phocisimile was originally identified in a free-living harbor seal in the German North Sea in 2004. Here, we announce the complete genome sequence of Arcanobacterium phocisimile strain DSM 26142.

| S-EPMC8281070 | biostudies-literature

Draft Genome Sequence of Mycobacterium fortuitum Isolated from Murine Brain.

Project description:Mycobacterium fortuitumsubsp.fortuitumATCC 6841 is a type and standard laboratory testing quality control strain. We report here the completed draft genome sequence for a strain isolated from the brains ofM. fortuitum-infected mice.

| S-EPMC4816625 | biostudies-literature

Draft Genome Sequence of a Mycobacterium chelonae subsp. <i>bovis</i> Strain Isolated from a Baikal Seal (Pusa sibirica) in Captivity.

Project description:Mycobacterium chelonae is a nontuberculous mycobacterium that causes infections in various animals, including humans. In this study, we report the draft genome sequence of M. chelonae subsp. bovis strain NJB1701, which was isolated from a Baikal seal (Pusa sibirica) in captivity in Japan.

| S-EPMC10019254 | biostudies-literature

Draft Genome Sequence of a Novel Marinobacter sp. Strain from Honolulu Harbor, Hawai'i.

Project description:Marinobacter sp. strain X15-166BT was cultivated from sediment in Honolulu Harbor, Hawai'i. The X15-166BT draft genome of 3,490,661 bp encodes 3,115 protein-coding open reading frames. We anticipate that the genome will provide insights into the strain's lifestyle and the evolution of Marinobacter.

| S-EPMC5146442 | biostudies-literature

Novel B19-like parvovirus in the brain of a harbor seal.

Project description:Using random PCR in combination with next-generation sequencing, a novel parvovirus was detected in the brain of a young harbor seal (Phoca vitulina) with chronic non-suppurative meningo-encephalitis that was rehabilitated at the Seal Rehabilitation and Research Centre (SRRC) in the Netherlands. In addition, two novel viruses belonging to the family Anelloviridae were detected in the lungs of this animal. Phylogenetic analysis of the coding sequence of the novel parvovirus, tentatively called Seal parvovirus, indicated that this virus belonged to the genus Erythrovirus, to which human parvovirus B19 also belongs. Although no other seals with similar signs were rehabilitated in SRRC in recent years, a prevalence study of tissues of seals from the same area collected in the period 2008-2012 indicated that the Seal parvovirus has circulated in the harbor seal population at least since 2008. The presence of the Seal parvovirus in the brain was confirmed by real-time PCR and in vitro replication. Using in situ hybridization, we showed for the first time that a parvovirus of the genus Erythrovirus was present in the Virchow-Robin space and in cerebral parenchyma adjacent to the meninges. These findings showed that a parvovirus of the genus Erythrovirus can be involved in central nervous system infection and inflammation, as has also been suspected but not proven for human parvovirus B19 infection.

| S-EPMC3818428 | biostudies-literature

Draft genome and transcriptomics reveals of Phocine herpesvirus-1 infections in the brains of harbor seals

Project description:A draft genome combined with transcriptomics reveals unique aspects of Phocine herpesvirus-1 infections in the brains of harbor seals

| PRJEB22355 | ENA

Arcanobacterium pinnipediorum Strain DSM 28752 Isolated from a Harbour Seal: Complete Genome Sequence.

Project description:The genus Arcanobacterium is constantly growing as novel species are identified. In particular, harbor seals have proven to be a common reservoir for bacteria of this genus. Here, we announce the complete genome sequence of another Arcanobacterium species-namely, Arcanobacterium pinnipediorum strain DSM 28752, isolated from a harbor seal.

| S-EPMC9872578 | biostudies-literature

Harbor Seal Brain Virome and Microbiome

Project description:Brain meta-transcriptomics from harbor seals to infer the role of the microbiome and virome in a stranding event

| PRJEB11686 | ENA