Browse
Submit Data
Databases
API
Help

Dataset Information

20 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Complete Genome Sequence of a Carrot Torradovirus 1 Isolate, Obtained from Angelica keiskei in Japan.

ABSTRACT: The complete genome sequence of the first Japanese isolate of carrot torradovirus 1 (CaTV1-J), which infects Angelica keiskei, was determined. This is the first report of a CaTV1 isolate obtained from A. keiskei.

SUBMITTER: Tokuda R

PROVIDER: S-EPMC6460027 | biostudies-literature | 2019 Apr

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

Complete Genome Sequence of a Carrot Torradovirus 1 Isolate, Obtained from Angelica keiskei in Japan.

Tokuda Ryosuke R Nishikawa Masanobu M Hosoe Naoi N Nijo Takamichi T Iwabuchi Nozomu N Yoshida Tetsuya T Watanabe Kiyoto K Maejima Kensaku K Yamaji Yasuyuki Y Namba Shigetou S

Microbiology resource announcements 20190411 15

The complete genome sequence of the first Japanese isolate of carrot torradovirus 1 (CaTV1-J), which infects Angelica keiskei, was determined. This is the first report of a CaTV1 isolate obtained from A. keiskei. ...[more]

PMID: 30975804

Similar Datasets

Complete Genome Sequence of a Lily virus X Isolate from Japan.

Project description:The complete genome sequence of Lily virus X (LVX), which infects lilies, was determined for the first time from lilies in Japan. As with previous reports, the genome of the Japanese LVX isolate lacked an AUG start codon for the triple gene block protein 3-like region.

| S-EPMC5786675 | biostudies-literature

Angelica keiskei

Project description:Angelica keiskei Raw sequence reads

| PRJNA670261 | ENA

Angelica keiskei

Project description:Genetic Diversity and Origin of Cultivation in Angelica keiskei

| PRJDB18265 | ENA

Angelica keiskei

Project description:Angelica keiskei overview

| PRJNA717867 | ENA

Complete Genome Sequence of a Tilapia Lake Virus Isolate Obtained from Nile Tilapia (Oreochromis niloticus).

Project description:Since its discovery in 2014, tilapia lake virus (TiLV) has emerged as a significant cause of mortality in tilapia cultured in Asia, Africa, and South America. Here, we report the complete genome sequence of a TiLV isolate obtained during a diagnostic investigation of an ongoing mortality event involving Nile tilapia cultured in Thailand.

| S-EPMC6025939 | biostudies-literature

Complete Genome Sequence of a Multidrug-Resistant Acinetobacter baumannii Isolate Obtained from a Mexican Hospital (Sequence Type 422).

Project description:Acinetobacter baumannii has emerged as a dangerous nosocomial pathogen, particularly for severely ill patients in intensive care units and patients with hematologic malignancies. Here, we present the complete genome sequence of a multidrug-resistant A. baumannii isolate, recovered from a Mexican hospital and classified as sequence type 422 according to the multilocus sequence typing Pasteur scheme.

| S-EPMC4919404 | biostudies-literature

Complete Genome Sequence of the First Isolate of Hibiscus Latent Singapore Virus Detected in Japan.

Project description:The complete genome sequence of the first Japanese isolate of hibiscus latent Singapore virus (HLSV-J) was determined. The genomes of HLSV-J and a reported isolate from Singapore had only 86.7% nucleotide identity, while the encoded proteins shared amino acid identities of more than 95%.

| S-EPMC5814506 | biostudies-literature

The complete chloroplast genome sequence of Angelica Tsinlingensis (Apioideae).

Project description:Angelica tsinlingensis is endemic in Shaanxi province (China), and is used as Angelica sinensis in folk. Owing to important medicinal value, wild A. sinensis has been over-exploited and become quite rare in China during over 2000 years. Angelica sensu lato (s.l.; Apiaceae subfamily Apioideae) is a taxonomically complex and controversial group, and A. tsinlingensis is clearly different from members of the Angelica s.s. clade with the morphological and molecular results. The complete chloroplast DNA sequence of A. tsinlingensis (GenBank accession number: MF924726) was determined in our study. The size of chloroplast genome of A. tsinlingensis is 147,104 bp, including a large single-copy (LSC) region of 93376 bp and a small single-copy (SSC) region of 17,574 bp separated by a pair of identical inverted repeat regions (IRs) of 18,077 bp each. A total of 125 genes were successfully annotated containing 83 protein-coding genes, 34 tRNA genes and 8 rRNA genes. GC content of IRs region is the highest (44.5%). The result of Phylogenomic analysis supports the difference of A. tsinlingensis from Angelica s.s. clade.

| S-EPMC7799626 | biostudies-literature

The complete chloroplast genome sequence of Angelica laevigata Fisch.

Project description:Angelica laevigata (Fisch 1812) is an important medicinal plant endowed with a rich chemical composition. In the present study, we present the complete chloroplast genome sequence of A. laevigata. The total length was 146,161 bp, comprising a large single-copy region of 93,538 bp and a small single-copy region of 17,779 bp separated by two inverted repeats of 17,422 bp each. A total of 128 genes were identified containing 87 protein-coding genes, 33 tRNA genes, and 8 rRNA genes. Phylogenetic analysis suggests that A. laevigata is closely associated with Angelica laxifoliata from the Umbelliferae family.

| S-EPMC8330772 | biostudies-literature

Complete genome sequence of the first isolate of genotype C bovine parainfluenza virus type 3 in Japan.

Project description:Bovine parainfluenza virus type 3 (BPIV3) isolates are classified into three genotypes (BPIV3a to -c). Here, we report the complete genome sequence of the BPIV3c isolate for the first time in Japan. Our results indicate that new primer sets will be required to detect all genotypes of BPIV3 strains.

| S-EPMC4246162 | biostudies-literature