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Adaptation of a laboratory protocol to quantity microplastics contamination in estuarine waters.

ABSTRACT: One of the most used protocols to extract and quantify MPs is NOAA protocol in aquatic environments. However, there is still no standardized method to extract and quantify MPs in estuarine waters. The aim of this work was to adapt the NOAA protocol to quantify microplastics in estuarine water and provide all the details and changes to improve the efficiency of the method. For that, four types of plastic (PE-LD; PET; PA; PE-HD) were used in artificial samples to test all the steps of the protocol. Several criteria were tested, namely: (i) quantities of H₂O₂ used for organic matter degradation; (ii) temperatures of drying samples; and (iii) density separation efficacy. With the proposed modifications, the microplastics extraction were above 90%, regardless the type of plastic, with PE-LD reaching 100% of efficiency. The new adapted protocol that we propose will allow a better efficiency in extraction and quantification of microplastics in samples from estuarine environments. •Four different types of plastic (PE-LD; PET; PA; PE-HD) were used to test the efficiency of the protocol•Details as the ideal quantity of H₂O₂, temperature and exact quantity of NaCl were tested and defined during the experiments•Efficiency of the microplastics extraction were above 90.

SUBMITTER: Rodrigues SM

PROVIDER: S-EPMC6462778 | biostudies-literature | 2019

REPOSITORIES: biostudies-literature

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Adaptation of a laboratory protocol to quantity microplastics contamination in estuarine waters.

Rodrigues S M SM R Almeida C Marisa CM Ramos S S

MethodsX 20190404

One of the most used protocols to extract and quantify MPs is NOAA protocol in aquatic environments. However, there is still no standardized method to extract and quantify MPs in estuarine waters. The aim of this work was to adapt the NOAA protocol to quantify microplastics in estuarine water and provide all the details and changes to improve the efficiency of the method. For that, four types of plastic (PE-LD; PET; PA; PE-HD) were used in artificial samples to test all the steps of the protocol ...[more]

PMID: 31011546

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Project description:Seasonal variation in the phylogenetic composition of Synechococcus assemblages in estuarine and coastal waters of Hong Kong was examined through pyrosequencing of the rpoC1 gene. Sixteen samples were collected in 2009 from two stations representing estuarine and ocean-influenced coastal waters, respectively. Synechococcus abundance in coastal waters gradually increased from 3.6 × 10(3) cells ml(-1) in March, reaching a peak value of 5.7 × 10(5) cells ml(-1) in July, and then gradually decreased to 9.3 × 10(3) cells ml(-1) in December. The changes in Synechococcus abundance in estuarine waters followed a pattern similar to that in coastal waters, whereas its composition shifted from being dominated by phycoerythrin-rich (PE-type) strains in winter to phycocyanin-only (PC-type) strains in summer owing to the increase in freshwater discharge from the Pearl River and higher water temperature. The high abundance of PC-type Synechococcus was composed of subcluster 5.2 marine Synechococcus, freshwater Synechococcus (F-PC), and Cyanobium. The Synechococcus assemblage in the coastal waters, on the other hand, was dominated by marine PE-type Synechococcus, with subcluster 5.1 clades II and VI as the major lineages from April to September, when the summer monsoon prevailed. Besides these two clades, clade III cooccurred with clade V at relatively high abundance in summer. During winter, the Synechococcus assemblage compositions at the two sites were similar and were dominated by subcluster 5.1 clades II and IX and an undescribed clade (represented by Synechococcus sp. strain miyav). Clade IX Synechococcus was a relatively ubiquitous PE-type Synechococcus found at both sites, and our study demonstrates that some strains of the clade have the ability to deal with large variation of salinity in subtropical estuarine environments. Our study suggests that changes in seawater temperature and salinity caused by the seasonal variation of monsoonal forcing are two major determinants of the community composition and abundance of Synechococcus assemblages in Hong Kong waters.

Project description:Anoxia occurs in bottom waters of stratified estuaries when respiratory consumption of oxygen, primarily by bacteria, outpaces atmospheric and photosynthetic reoxygenation. Once water becomes anoxic, bacterioplankton must change their metabolism to some form of anaerobic respiration. Analysis of redox chemistry in water samples spanning the oxycline of Chesapeake Bay during the summer of 2004 suggested that there was a succession of respiratory metabolism following the loss of oxygen. Bacterial community doubling time, calculated from bacterial abundance (direct counts) and production (anaerobic leucine incorporation), ranged from 0.36 to 0.75 day and was always much shorter than estimates of the time that the bottom water was anoxic (18 to 44 days), indicating that there was adequate time for bacterial community composition to shift in response to changing redox conditions. However, community composition (as determined by PCR-denaturing gradient gel electrophoresis analysis of 16S rRNA genes) in anoxic waters was very similar to that in surface waters in June when nitrate respiration was apparent in the water column and only partially shifted away from the composition of the surface community after nitrate was depleted. Anoxic water communities did not change dramatically until August, when sulfate respiration appeared to dominate. Surface water populations that remained dominant in anoxic waters were Synechococcus sp., Gammaproteobacteria in the SAR86 clade, and Alphaproteobacteria relatives of Pelagibacter ubique, including a putative estuarine-specific Pelagibacter cluster. Populations that developed in anoxic water were most similar (<92% similarity) to uncultivated Firmicutes, uncultivated Bacteroidetes, Gammaproteobacteria in the genus Thioalcalovibrio, and the uncultivated SAR406 cluster. These results indicate that typical estuarine bacterioplankton switch to anaerobic metabolism under anoxic conditions but are ultimately replaced by different organisms under sulfidic conditions.

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Adaptation of a laboratory protocol to quantity microplastics contamination in estuarine waters.

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Adaptation of a laboratory protocol to quantity microplastics contamination in estuarine waters.

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