Browse
Submit Data
Databases
API
Help

Dataset Information

10 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Bedrock-alluvial streams with knickpoint and plunge pool that migrate upstream with permanent form.

ABSTRACT: Purely alluvial rivers cannot sustain knickpoints along their long profiles, as they would be obliterated by diffusional morphodynamics. Bedrock streams with a partial alluvial cover, however, form and sustain slope breaks over long periods of time. Here we consider the case of an initial profile of a bedrock-alluvial stream with a sharp slope break, or knickpoint, from high to low midway. We show that if the initial flow is sufficiently Froude-supercritical in the upstream reach and Froude-subcritical in the downstream reach, a three-tiered structure can evolve at the slope break: a hydraulic jump at the water surface; a scour hole in the alluvium above the bedrock, and a plunge pool carved into bedrock. Once the profile adjusts to balance uplift, it can migrate upstream without changing form.

SUBMITTER: Zhang L

PROVIDER: S-EPMC6467923 | biostudies-literature |

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Similar Datasets

T lymphocytes migrate upstream after completing the leukocyte adhesion cascade.

Project description:The leukocyte adhesion cascade is of critical importance for both the maintenance of immune homeostasis and the ability of immune cells to perform effector functions. Here, we present data showing CD4+ T cells migrate upstream (against the direction of flow) after completing the leukocyte adhesion cascade on surfaces displaying either ICAM-1 or ICAM-1 and VCAM-1, but migrate downstream on surfaces displaying only VCAM-1. Cells completing the cascade on HUVECs initially migrate upstream before reverting to more random migration, partly caused by transmigration of cells migrating against the flow. Furthermore, cells migrating upstream transmigrate faster than cells migrating downstream. On HUVECs, blocking interactions between LFA-1 and ICAM-1 resulted in downstream migration and slower transmigration. These results further suggest a possible physiological role for upstream migration in vivo.

| S-EPMC6527389 | biostudies-literature

Microvascular endothelial cells migrate upstream and align against the shear stress field created by impinging flow.

Project description:At present, little is known about how endothelial cells respond to spatial variations in fluid shear stress such as those that occur locally during embryonic development, at heart valve leaflets, and at sites of aneurysm formation. We built an impinging flow device that exposes endothelial cells to gradients of shear stress. Using this device, we investigated the response of microvascular endothelial cells to shear-stress gradients that ranged from 0 to a peak shear stress of 9-210 dyn/cm(2). We observe that at high confluency, these cells migrate against the direction of fluid flow and concentrate in the region of maximum wall shear stress, whereas low-density microvascular endothelial cells that lack cell-cell contacts migrate in the flow direction. In addition, the cells align parallel to the flow at low wall shear stresses but orient perpendicularly to the flow direction above a critical threshold in local wall shear stress. Our observations suggest that endothelial cells are exquisitely sensitive to both magnitude and spatial gradients in wall shear stress. The impinging flow device provides a, to our knowledge, novel means to study endothelial cell migration and polarization in response to gradients in physical forces such as wall shear stress.

| S-EPMC3907231 | biostudies-literature

Intermittent pool beds are permanent cyclic habitats with distinct wet, moist and dry phases.

Project description:Recognition that intermittent pools are a single habitat phase of an intermittent pool bed that cycles between aquatic and terrestrial habitat greatly enhances their usefulness for addressing general questions in ecology. The aquatic phase has served as a model system in many ecological studies, because it has distinct habitat boundaries in space and time and is an excellent experimental system, but the aquatic to terrestrial transition and terrestrial phase remain largely unstudied. We conducted a field experiment within six replicate natural intermittent pool beds to explore macroinvertebrate community dynamics during the transition from aquatic to terrestrial habitat and during the terrestrial phase. We monitored and compared macroinvertebrate communities within leaf packs that i) remained wet, ii) underwent drying (i.e., started wet and then dried), and iii) remained dry. Our results show that i) a diverse macroinvertebrate community inhabits all phases of intermittent pool beds, ii) pool drying involves colonization by an assemblage of macroinvertebrates not recorded in permanently terrestrial leaf packs, iii) the community within dried leaf packs remains distinct from that of permanently terrestrial leaf packs for an extended period following drying (possibly until subsequent refilling), and iv) there are likely to be strong spatial and temporal resource linkages between the aquatic and terrestrial communities. The unique environmental characteristics of intermittent pool beds, which repeatedly cycle from aquatic to terrestrial habitat, should continue to make them valuable study systems.

| S-EPMC4171517 | biostudies-literature

Climate-driven changes of riparian plant functional types in permanent headwater streams. Implications for stream food webs.

Project description:Little is known regarding consequences of climate change on riparian plant functional types (PFTs) related to leaf traits, with putative domino effects on stream food webs, plausible even if the tipping point of stream-desiccation is not reached. We hypothesized that, as stream food-webs are highly dependent on riparian subsidies, climate change might alter PFTs to the point of weakening terrestrial-aquatic linkages. We conducted a gradient analysis to assess the relative effects of climate, soil and riparian physical characteristics on PFTs. If PFTs differ significantly in leaf traits and climate had major influences on them, we could assume space-for-time interchangeability forward in time to predict leaf traits changes, and consequences for stream food webs under future climate change scenarios. Results indicated a clear distinction in leaf traits among PFTs: woody deciduous plants showed leaf traits associated to high decomposability and nutritional value for invertebrate shredders compared to evergreen woody and giant graminoid groups. We found a prime role of climate predicting changes in abundance and diversity of PFTs: 1) a warming and precipitation-decline scenario, coupled with soil characteristics related to aridification, would have detrimental effects on deciduous plants, while fostering giant graminoids; 2) in a scenario of no precipitation-reduction in wetter areas, warming might promote the expansion of evergreen to the detriment of deciduous plants. In both scenarios the net outcome implies increasing recalcitrance of leaf litter inputs, potentially weakening terrestrial-aquatic linkages in headwater streams.

| S-EPMC6023121 | biostudies-literature

The influence of different morphological units on the turbulent flow characteristics in step-pool mountain streams.

Project description:The morphology of step-pools is often implemented for ecological restoration and for the creation of close-to-nature fish passes. Step-pools display spatio-temporal variations in bed and flow characteristics due to meso-scale units such as step, tread, base of step, and pool. Exclusive research on the effects of bed variations in step-pools on the flow dynamics is limited. Here, we conducted laboratory experiments on a physical model downscaled from a field site in the Western Ghats, Kerala, India. The results of Kruskal-Wallis ANOVA show significant differences in the velocity and turbulent intensities for the morphological units. A regression equation of the form Power-Allometric1 has been proposed to relate the normalized turbulent kinetic energy with the velocity magnitude. The present study also estimated the range of Reynolds shear stress and energy dissipation factor existent in the step-pool systems. The normalized values of Reynolds shear stress in the x-z plane ranged from - 19.477 to 13.729, and energy dissipation factors obtained for the three step-pool systems are 321, 207, and 123 W/m3; both the results reveal insufficient pool volume for adequate energy dissipation. The study concludes that while designing close-to-nature step-pool fish passes, pool dimensions should be finalized with respect to the target aquatic species.

| S-EPMC8505520 | biostudies-literature

How seabirds plunge-dive without injuries.

Project description:In nature, several seabirds (e.g., gannets and boobies) dive into water at up to 24 m/s as a hunting mechanism; furthermore, gannets and boobies have a slender neck, which is potentially the weakest part of the body under compression during high-speed impact. In this work, we investigate the stability of the bird's neck during plunge-diving by understanding the interaction between the fluid forces acting on the head and the flexibility of the neck. First, we use a salvaged bird to identify plunge-diving phases. Anatomical features of the skull and neck were acquired to quantify the effect of beak geometry and neck musculature on the stability during a plunge-dive. Second, physical experiments using an elastic beam as a model for the neck attached to a skull-like cone revealed the limits for the stability of the neck during the bird's dive as a function of impact velocity and geometric factors. We find that the neck length, neck muscles, and diving speed of the bird predominantly reduce the likelihood of injury during the plunge-dive. Finally, we use our results to discuss maximum diving speeds for humans to avoid injury.

| S-EPMC5087068 | biostudies-literature

Data on using macro invertebrates to investigate the biological integrity of permanent streams located in a semi-arid region.

Project description:The aquatic ecosystems are continuously endangered due to variety of hazardous chemicals containing different toxic agents which can be emitted from anthropogenic sources. Besides the increasing of human population, various kinds of contaminants enter into the surface water resources. The aim of the present study was to investigate the abundance and diversity of macro invertebrates in two permanent streams located in the northern part of Tehran. The biological integrity of the streams was determined by manual sampling approach at five points. The distances between the sampling points were at least 2 km. The bio indicator organisms, organic pollution, and dissolved oxygen were measured. The different types of benthic invertebrates such as riffle beetle, midge and caddish fly larvae, dragon fly, may fly and stone fly nymph, riffle beetle adult, pyralid caterpillar, leech, and pouch snail were identified. It can be concluded that, the identified benthic macro invertebrates can be served as appropriate biological indicator in the studied area.

| S-EPMC5997610 | biostudies-literature

CDPK2A and CDPK1 form a signaling module upstream of <i>Toxoplasma</i> motility.

Project description:ImportanceThis work uncovers interactions between various signaling pathways that govern Toxoplasma gondii egress. Specifically, we compare the function of three canonical calcium-dependent protein kinases (CDPKs) using chemical-genetic and conditional-depletion approaches. We describe the function of a previously uncharacterized CDPK, CDPK2A, in the Toxoplasma lytic cycle, demonstrating that it contributes to parasite fitness through regulation of microneme discharge, gliding motility, and egress from infected host cells. Comparison of analog-sensitive kinase alleles and conditionally depleted alleles uncovered epistasis between CDPK2A and CDPK1, implying a partial functional redundancy. Understanding the topology of signaling pathways underlying key events in the parasite life cycle can aid in efforts targeting kinases for anti-parasitic therapies.

| S-EPMC10653799 | biostudies-literature