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CRISPR-assisted multi-dimensional regulation for fine-tuning gene expression in Bacillus subtilis.


ABSTRACT: Fine-tuning of gene expression is crucial for protein expression and pathway construction, but it still faces formidable challenges due to the hierarchical gene regulation at multiple levels in a context-dependent manner. In this study, we defined the optimal targeting windows for CRISPRa and CRISPRi of the dCas9-?/? system, and demonstrated that this system could act as a single master regulator to simultaneously activate and repress the expression of different genes by designing position-specific gRNAs. The application scope of dCas9-? was further expanded by a newly developed CRISPR-assisted Oligonucleotide Annealing based Promoter Shuffling (OAPS) strategy, which could generate a high proportion of functional promoter mutants and facilitate the construction of effective promoter libraries in microorganisms with low transformation efficiency. Combing OAPS and dCas9-?, the influences of promoter-based transcription, molecular chaperone-assisted protein folding and protease-mediated degradation on the expression of amylase BLA in Bacillus subtilis were systematically evaluated, and a 260-fold enhancement of BLA production was obtained. The success of the OAPS strategy and dCas9-? for BLA production in this study thus demonstrated that it could serve as a powerful tool kit to regulate the expression of multiple genes multi-directionally and multi-dimensionally in bacteria.

SUBMITTER: Lu Z 

PROVIDER: S-EPMC6468239 | biostudies-literature | 2019 Apr

REPOSITORIES: biostudies-literature

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CRISPR-assisted multi-dimensional regulation for fine-tuning gene expression in Bacillus subtilis.

Lu Zhenghui Z   Yang Shihui S   Yuan Xin X   Shi Yunyun Y   Ouyang Li L   Jiang Sijing S   Yi Li L   Zhang Guimin G  

Nucleic acids research 20190401 7


Fine-tuning of gene expression is crucial for protein expression and pathway construction, but it still faces formidable challenges due to the hierarchical gene regulation at multiple levels in a context-dependent manner. In this study, we defined the optimal targeting windows for CRISPRa and CRISPRi of the dCas9-α/ω system, and demonstrated that this system could act as a single master regulator to simultaneously activate and repress the expression of different genes by designing position-speci  ...[more]

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