Dataset Information

Importance of mixotrophic flagellates during the ice-free season in lakes located along an elevational gradient.

ABSTRACT: Mixotrophy seems to be widespread among phytoplankton, but whether this strategy is more relevant in oligotrophic lakes remains unclear. Here, we tested the hypothesis that the relative abundance of mixotrophic flagellates in lakes increases along an elevational gradient paralleling increasingly oligotrophic conditions. For this purpose, 12 lakes located between 575 and 2796 m above sea level were sampled in summer and fall to include two different seasonal windows in phytoplankton dynamics and environmental conditions. The degree of mixotrophy in phytoplankton was estimated in tracer experiments using fluorescently-labeled bacteria and done with composite samples collected in the euphotic zone and in samples obtained from the chlorophyll-a maximum. The results indicated the existence of a positive trend particularly in summer in the relative abundance of mixotrophic flagellates with elevation, however, this trend was not linear, and exceptions along the elevational gradient were found. Changes in the relative abundance of mixotrophic flagellates were related with significant changes in water transparency, DOC and phosphorus concentrations, as well as in bacterial and flagellate abundance. Overall, our results reveal that the harsh growth conditions found in oligotrophic high mountain lakes favor a mixotrophic trophic strategy among phytoplankton.

SUBMITTER: Waibel A

PROVIDER: S-EPMC6469636 | biostudies-literature | 2019

REPOSITORIES: biostudies-literature

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Importance of mixotrophic flagellates during the ice-free season in lakes located along an elevational gradient.

Waibel Anna A Peter Hannes H Sommaruga Ruben R

Aquatic sciences 20190416 3

Mixotrophy seems to be widespread among phytoplankton, but whether this strategy is more relevant in oligotrophic lakes remains unclear. Here, we tested the hypothesis that the relative abundance of mixotrophic flagellates in lakes increases along an elevational gradient paralleling increasingly oligotrophic conditions. For this purpose, 12 lakes located between 575 and 2796 m above sea level were sampled in summer and fall to include two different seasonal windows in phytoplankton dynamics and ...[more]

PMID: 31057304

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Project description:Alpine lakes support unique communities which may respond with great sensitivity to climate change. Thus, an understanding of the drivers of the structure of communities inhabiting alpine lakes is important to predict potential changes in the future. To this end, we sampled benthic macroinvertebrate communities and measured environmental variables (water temperature, dissolved oxygen, conductivity, pH, nitrate, turbidity, blue-green algal phycocyanin, chlorophyll-a) as well as structural parameters (habitat type, lake size, maximum depth) in 28 lakes within Hohe Tauern National Park, Austria, between altitudes of 2,000 and 2,700 m a.s.l. The most abundant macroinvertebrate taxa that we found were Chironomidae and Oligochaeta. Individuals of Coleoptera, Diptera, Hemiptera, Plecoptera, Trichoptera, Tricladida, Trombidiformes, Veneroida were found across the lakes and determined to family level. Oligochaeta were not determined further. Generalized linear modeling and permanova were used to identify the impact of measured parameters on macroinvertebrate communities. We found that where rocky habitats dominated the lake littoral, total macroinvertebrate abundance and family richness were lower while the ratio of Ephemeroptera, Plecoptera and Trichoptera (EPT) was higher. Zoo- and phytoplankton densities were measured in a subset of lakes but were not closely associated with macroinvertebrate abundance or family richness. With increasing elevation, macroinvertebrate abundances in small and medium-sized lakes increased while they decreased in large lakes, with a clear shift in community composition (based on families). Our results show that habitat parameters (lake size, habitat type) have a major influence on benthic macroinvertebrate community structure whereas elevation itself did not show any significant effects on communities. However, even habitat parameters are likely to change under climate change scenarios (e.g. via increased erosion) and this may affect alpine lake macroinvertebrates.

Project description:BackgroundPlant genomes can respond rapidly to environmental changes and transposable elements (TEs) arise as important drivers contributing to genome dynamics. Although some elements were reported to be induced by various abiotic or biotic factors, there is a lack of general understanding on how environment influences the activity and diversity of TEs. Here, we combined common garden experiment with short-read sequencing to investigate genomic abundance and expression of 2245 consensus TE sequences (containing retrotransposons and DNA transposons) in an alpine environment in Arabidopsis arenosa. To disentangle general trends from local differentiation, we leveraged four foothill-alpine population pairs from different mountain regions. Seeds of each of the eight populations were raised under four treatments that differed in temperature and irradiance, two factors varying with elevation. RNA-seq analysis was performed on leaves of young plants to test for the effect of elevation and subsequently of temperature and irradiance on expression of TE sequences.ResultsGenomic abundance of the 2245 consensus TE sequences varied greatly between the mountain regions in line with neutral divergence among the regions, representing distinct genetic lineages of A. arenosa. Accounting for intraspecific variation in abundance, we found consistent transcriptomic response for some TE sequences across the different pairs of foothill-alpine populations suggesting parallelism in TE expression. In particular expression of retrotransposon LTR Copia (e.g. Ivana and Ale clades) and LTR Gypsy (e.g. Athila and CRM clades) but also non-LTR LINE or DNA transposon TIR MuDR consistently varied with elevation of origin. TE sequences responding specifically to temperature and irradiance belonged to the same classes as well as additional TE clades containing potentially stress-responsive elements (e.g. LTR Copia Sire and Tar, LTR Gypsy Reina).ConclusionsOur study demonstrated that the A. arenosa genome harbours a considerable diversity of TE sequences whose abundance and expression response varies across its native range. Some TE clades may contain transcriptionally active elements responding to a natural environmental gradient. This may further contribute to genetic variation between populations and may ultimately provide new regulatory mechanisms to face environmental challenges.

Dataset Information

Importance of mixotrophic flagellates during the ice-free season in lakes located along an elevational gradient.

Publications

Importance of mixotrophic flagellates during the ice-free season in lakes located along an elevational gradient.

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