Unknown

Dataset Information

0

A unique life-strategy of an endophytic yeast Rhodotorula mucilaginosa JGTA-S1-a comparative genomics viewpoint.


ABSTRACT: Endophytic yeasts of genus Rhodotorula are gaining importance for their ability to improve plant growth. The nature of their interaction with plants, however, remains unknown. Rhodotorula mucilaginosa JGTA-S1 was isolated as an endophyte of Typha angustifolia and promoted growth in the host. To investigate the life-strategy of the yeast from a genomics perspective, we used Illumina and Oxford Nanopore reads to generate a high-quality annotated draft assembly of JGTA-S1 and compared its genome to three other Rhodotorula yeasts and the close relative Rhodosporidium toruloides. JGTA-S1 is a haploid yeast possessing several genes potentially facilitating its endophytic lifestyle such as those responsible for solubilizing phosphate and producing phytohormones. An intact mating-locus in JGTA-S1 raised the possibility of a yet unknown sexual reproductive cycle in Rhodotorula yeasts. Additionally, JGTA-S1 had functional anti-freezing genes and was also unique in lacking a functional nitrate-assimilation pathway-a feature that is associated with obligate biotrophs. Nitrogen-fixing endobacteria were found within JGTA-S1 that may circumvent this defective N-metabolism. JGTA-S1 genome data coupled with experimental evidence give us an insight into the nature of its beneficial interaction with plants.

SUBMITTER: Sen D 

PROVIDER: S-EPMC6476726 | biostudies-literature | 2019 Apr

REPOSITORIES: biostudies-literature

altmetric image

Publications

A unique life-strategy of an endophytic yeast Rhodotorula mucilaginosa JGTA-S1-a comparative genomics viewpoint.

Sen Diya D   Paul Karnelia K   Saha Chinmay C   Mukherjee Gairik G   Nag Mayurakshi M   Ghosh Samrat S   Das Abhishek A   Seal Anindita A   Tripathy Sucheta S  

DNA research : an international journal for rapid publication of reports on genes and genomes 20190401 2


Endophytic yeasts of genus Rhodotorula are gaining importance for their ability to improve plant growth. The nature of their interaction with plants, however, remains unknown. Rhodotorula mucilaginosa JGTA-S1 was isolated as an endophyte of Typha angustifolia and promoted growth in the host. To investigate the life-strategy of the yeast from a genomics perspective, we used Illumina and Oxford Nanopore reads to generate a high-quality annotated draft assembly of JGTA-S1 and compared its genome to  ...[more]

Similar Datasets

| S-EPMC3168190 | biostudies-literature
| S-EPMC4664776 | biostudies-literature
| S-EPMC7823890 | biostudies-literature
| S-EPMC5333980 | biostudies-literature
2019-12-11 | GSE141796 | GEO
| S-EPMC6436437 | biostudies-literature
| S-EPMC7290102 | biostudies-literature
| S-EPMC6695916 | biostudies-literature
| PRJNA393004 | ENA
| S-EPMC3848517 | biostudies-literature