FarmCPUpp: Efficient large-scale genomewide association studies.
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ABSTRACT:
SUBMITTER: Kusmec A
PROVIDER: S-EPMC6508500 | biostudies-literature | 2018 Apr
REPOSITORIES: biostudies-literature
Publications
FarmCPUpp: Efficient large-scale genomewide association studies.
Kusmec Aaron A Schnable Patrick S PS
Plant direct 20180410 4
Genomewide association studies (GWAS) are computationally demanding analyses that use large sample sizes and dense marker sets to discover associations between quantitative trait variation and genetic variants. FarmCPU is a powerful new method for performing GWAS. However, its performance is hampered by details of its implementation and its reliance on the R programming language. In this paper, we present an efficient implementation of FarmCPU, called FarmCPUpp, that retains the R user interface ...[more]
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