Browse
Submit Data
Databases
API
Help

Dataset Information

18 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

A Retinal Circuit Generating a Dynamic Predictive Code for Oriented Features.

ABSTRACT: Sensory systems must reduce the transmission of redundant information to function efficiently. One strategy is to continuously adjust the sensitivity of neurons to suppress responses to common features of the input while enhancing responses to new ones. Here we image the excitatory synaptic inputs and outputs of retinal ganglion cells to understand how such dynamic predictive coding is implemented in the analysis of spatial patterns. Synapses of bipolar cells become tuned to orientation through presynaptic inhibition, generating lateral antagonism in the orientation domain. Individual ganglion cells receive excitatory synapses tuned to different orientations, but feedforward inhibition generates a high-pass filter that only transmits the initial activation of these inputs, removing redundancy. These results demonstrate how a dynamic predictive code can be implemented by circuit motifs common to many parts of the brain.

SUBMITTER: Johnston J

PROVIDER: S-EPMC6591004 | biostudies-literature | 2019 Jun

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

A Retinal Circuit Generating a Dynamic Predictive Code for Oriented Features.

Johnston Jamie J Seibel Sofie-Helene SH Darnet Léa Simone Adele LSA Renninger Sabine S Orger Michael M Lagnado Leon L

Neuron 20190501 6

Sensory systems must reduce the transmission of redundant information to function efficiently. One strategy is to continuously adjust the sensitivity of neurons to suppress responses to common features of the input while enhancing responses to new ones. Here we image the excitatory synaptic inputs and outputs of retinal ganglion cells to understand how such dynamic predictive coding is implemented in the analysis of spatial patterns. Synapses of bipolar cells become tuned to orientation through ...[more]

PMID: 31054873

Similar Datasets

Circuit mechanisms underlying embryonic retinal waves.

Project description:Spontaneous activity is a hallmark of developing neural systems. In the retina, spontaneous activity comes in the form of retinal waves, comprised of three stages persisting from embryonic day 16 (E16) to eye opening at postnatal day 14 (P14). Though postnatal retinal waves have been well characterized, little is known about the spatiotemporal properties or the mechanisms mediating embryonic retinal waves, designated stage 1 waves. Using a custom-built macroscope to record spontaneous calcium transients from whole embryonic retinas, we show that stage 1 waves are initiated at several locations across the retina and propagate across a broad range of areas. Blocking gap junctions reduced the frequency and size of stage 1 waves, nearly abolishing them. Global blockade of nAChRs similarly nearly abolished stage 1 waves. Thus, stage 1 waves are mediated by a complex circuitry involving subtypes of nAChRs and gap junctions. Stage 1 waves in mice lacking the β2 subunit of the nAChRs (β2-nAChR-KO) persisted with altered propagation properties and were abolished by a gap junction blocker. To assay the impact of stage 1 waves on retinal development, we compared the spatial distribution of a subtype of retinal ganglion cells, intrinsically photosensitive retinal ganglion cells (ipRGCs), which undergo a significant amount of cell death, in WT and β2-nAChR-KO mice. We found that the developmental decrease in ipRGC density is preserved between WT and β2-nAChR-KO mice, indicating that processes regulating ipRGC numbers and distributions are not influenced by spontaneous activity.

| S-EPMC9988258 | biostudies-literature

Error-Robust Modes of the Retinal Population Code.

Project description:Across the nervous system, certain population spiking patterns are observed far more frequently than others. A hypothesis about this structure is that these collective activity patterns function as population codewords-collective modes-carrying information distinct from that of any single cell. We investigate this phenomenon in recordings of ∼150 retinal ganglion cells, the retina's output. We develop a novel statistical model that decomposes the population response into modes; it predicts the distribution of spiking activity in the ganglion cell population with high accuracy. We found that the modes represent localized features of the visual stimulus that are distinct from the features represented by single neurons. Modes form clusters of activity states that are readily discriminated from one another. When we repeated the same visual stimulus, we found that the same mode was robustly elicited. These results suggest that retinal ganglion cells' collective signaling is endowed with a form of error-correcting code-a principle that may hold in brain areas beyond retina.

| S-EPMC5113862 | biostudies-literature

A task-oriented circuit training in multiple sclerosis: a feasibility study.

Project description:The aim of this study was to evaluate the safety, feasibility and preliminary effects of a high-intensity rehabilitative task-oriented circuit training (TOCT) in a sample of multiple sclerosis (MS) subjects on walking competency, mobility, fatigue and health-related quality of life (HRQoL).24 MS subjects (EDSS 4.89?±?0.54, 17 female and 7 male, 52.58?±?11.21 years, MS duration 15.21?±?8.68 years) have been enrolled and randomly assigned to 2 treatment groups: (i) experimental group received 10 TOCT sessions over 2 weeks (2 hours/each session) followed by a 3 months home exercise program, whereas control group did not receive any specific rehabilitation intervention. A feasibility patient-reported questionnaire was administered after TOCT. Functional outcome measures were: walking endurance (Six Minute Walk Test), gait speed (10 Meter Walk Test), mobility (Timed Up and Go test) and balance (Dynamic Gait Index). Furthermore, self-reported questionnaire of motor fatigue (Fatigue Severity Scale), walking ability (Multiple Sclerosis Walking Scale - 12) and health-related quality of life (Multiple Sclerosis Impact Scale - 29) were included. Subjects' assessments were delivered at baseline (T0), after TOCT (T1) and 3 months of home-based exercise program (T2).After TOCT subjects reported a positive global rating on the received treatment. At 3 months, we found a 58.33% of adherence to the home-exercise program. After TOCT, walking ability and health-related quality of life were improved (p?<?0.05) with minor retention after 3 months. The control group showed no significant changes in any variables.This two weeks high-intensity task-oriented circuit class training followed by a three months home-based exercise program seems feasible and safe in MS people with moderate mobility impairments; moreover it might improve walking abilities.NCT01464749.

| S-EPMC4059088 | biostudies-literature

Correction: Error-Robust Modes of the Retinal Population Code.

Project description:[This corrects the article DOI: 10.1371/journal.pcbi.1005148.].

| S-EPMC5695272 | biostudies-literature

More to diverse: Generating diversified responses in a task oriented multimodal dialog system.

Project description:Multimodal dialogue system, due to its many-fold applications, has gained much attention to the researchers and developers in recent times. With the release of large-scale multimodal dialog dataset Saha et al. 2018 on the fashion domain, it has been possible to investigate the dialogue systems having both textual and visual modalities. Response generation is an essential aspect of every dialogue system, and making the responses diverse is an important problem. For any goal-oriented conversational agent, the system's responses must be informative, diverse and polite, that may lead to better user experiences. In this paper, we propose an end-to-end neural framework for generating varied responses in a multimodal dialogue setup capturing information from both the text and image. Multimodal encoder with co-attention between the text and image is used for focusing on the different modalities to obtain better contextual information. For effective information sharing across the modalities, we combine the information of text and images using the BLOCK fusion technique that helps in learning an improved multimodal representation. We employ stochastic beam search with Gumble Top K-tricks to achieve diversified responses while preserving the content and politeness in the responses. Experimental results show that our proposed approach performs significantly better compared to the existing and baseline methods in terms of distinct metrics, and thereby generates more diverse responses that are informative, interesting and polite without any loss of information. Empirical evaluation also reveals that images, while used along with the text, improve the efficiency of the model in generating diversified responses.

| S-EPMC7644051 | biostudies-literature

Generating Recombinant Antibodies against Putative Biomarkers of Retinal Injury.

Project description:Candidate biomarkers, indicative of disease or injury, are beginning to overwhelm the process of validation through immunological means. Recombinant antibodies developed through phage-display offer an alternative means of generating monoclonal antibodies faster than traditional immunization of animals. Peptide segments of putative biomarkers of laser induced injury in the rabbit, discovered through mass spectrometry, were used as targets for a selection against a library of phage-displayed human single-chain variable fragment (scFv) antibodies. Highly specific antibodies were isolated to four of these unique peptide sequences. One antibody against the retinal protein, Guanine Nucleotide-Binding Protein Beta 5 (GBB5), had a dissociation constant ~300 nM and recognized the full-length endogenous protein in retinal homogenates of three different animal species by western blot. Alanine scanning of the peptide target identified three charged and one hydrophobic amino acid as the critical binding residues for two different scFvs. To enhance the utility of the reagent, one scFv was dimerized through a Fragment-crystallizable hinge region (i.e., Fc) and expressed in HEK-293 cells. This dimeric reagent yielded a 25-fold lower detection limit in western blots.

| S-EPMC4406585 | biostudies-literature

The structured 'low temperature' phase of the retinal population code.

Project description:Recent advances in experimental techniques have allowed the simultaneous recordings of populations of hundreds of neurons, fostering a debate about the nature of the collective structure of population neural activity. Much of this debate has focused on the empirical findings of a phase transition in the parameter space of maximum entropy models describing the measured neural probability distributions, interpreting this phase transition to indicate a critical tuning of the neural code. Here, we instead focus on the possibility that this is a first-order phase transition which provides evidence that the real neural population is in a 'structured', collective state. We show that this collective state is robust to changes in stimulus ensemble and adaptive state. We find that the pattern of pairwise correlations between neurons has a strength that is well within the strongly correlated regime and does not require fine tuning, suggesting that this state is generic for populations of 100+ neurons. We find a clear correspondence between the emergence of a phase transition, and the emergence of attractor-like structure in the inferred energy landscape. A collective state in the neural population, in which neural activity patterns naturally form clusters, provides a consistent interpretation for our results.

| S-EPMC5654267 | biostudies-literature

A Genetic Circuit Compiler: Generating Combinatorial Genetic Circuits with Web Semantics and Inference.

Project description:A central strategy of synthetic biology is to understand the basic processes of living creatures through engineering organisms using the same building blocks. Biological machines described in terms of parts can be studied by computer simulation in any of several languages or robotically assembled in vitro. In this paper we present a language, the Genetic Circuit Description Language (GCDL) and a compiler, the Genetic Circuit Compiler (GCC). This language describes genetic circuits at a level of granularity appropriate both for automated assembly in the laboratory and deriving simulation code. The GCDL follows Semantic Web practice, and the compiler makes novel use of the logical inference facilities that are therefore available. We present the GCDL and compiler structure as a study of a tool for generating ?-language simulations from semantic descriptions of genetic circuits.

| S-EPMC6305556 | biostudies-literature

Fast and simple scheme for generating NOON states of photons in circuit QED.

Project description:The generation, manipulation and fundamental understanding of entanglement lies at very heart of quantum mechanics. Among various types of entangled states, the NOON states are a kind of special quantum entangled states with two orthogonal component states in maximal superposition, which have a wide range of potential applications in quantum communication and quantum information processing. Here, we propose a fast and simple scheme for generating NOON states of photons in two superconducting resonators by using a single superconducting transmon qutrit. Because only one superconducting qutrit and two resonators are used, the experimental setup for this scheme is much simplified when compared with the previous proposals requiring a setup of two superconducting qutrits and three cavities. In addition, this scheme is easier and faster to implement than the previous proposals, which require using a complex microwave pulse, or a small pulse Rabi frequency in order to avoid nonresonant transitions.

| S-EPMC3904151 | biostudies-other

A retinal code for motion along the gravitational and body axes.

Project description:Self-motion triggers complementary visual and vestibular reflexes supporting image-stabilization and balance. Translation through space produces one global pattern of retinal image motion (optic flow), rotation another. We examined the direction preferences of direction-sensitive ganglion cells (DSGCs) in flattened mouse retinas in vitro. Here we show that for each subtype of DSGC, direction preference varies topographically so as to align with specific translatory optic flow fields, creating a neural ensemble tuned for a specific direction of motion through space. Four cardinal translatory directions are represented, aligned with two axes of high adaptive relevance: the body and gravitational axes. One subtype maximizes its output when the mouse advances, others when it retreats, rises or falls. Two classes of DSGCs, namely, ON-DSGCs and ON-OFF-DSGCs, share the same spatial geometry but weight the four channels differently. Each subtype ensemble is also tuned for rotation. The relative activation of DSGC channels uniquely encodes every translation and rotation. Although retinal and vestibular systems both encode translatory and rotatory self-motion, their coordinate systems differ.

| S-EPMC5729591 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data