Dataset Information

Recent morphologic evolution of the German Wadden Sea.

ABSTRACT: The Wadden Sea is a unique and important intertidal coastal zone under the pressure of changing driving forces (i.e. sea level rise, storm surges and increasing tidal range). In this study, we characterize the recent morphologic evolution of the German part of the Wadden Sea for the time period 1998 to 2016 based on a large dataset of available digital elevation models. A sediment budget analysis reveals that the Wadden Sea is accumulating sediment. Changes in the ratio of intertidal to subtidal surface area indicate an extension of the intertidal zone. Most of the intertidal flats accumulate sediments with rates higher than the observed mean sea level rise in the German Bight, while simultaneously the subtidal mean depth increases. For the period of investigation this Wadden Sea steepening is quantified to averaged values of +7.9 mm/yr for the tidal flats and -20.0 mm/yr for the channels.

SUBMITTER: Benninghoff M

PROVIDER: S-EPMC6594939 | biostudies-literature | 2019 Jun

REPOSITORIES: biostudies-literature

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Recent morphologic evolution of the German Wadden Sea.

Benninghoff Markus M Winter Christian C

Scientific reports 20190626 1

The Wadden Sea is a unique and important intertidal coastal zone under the pressure of changing driving forces (i.e. sea level rise, storm surges and increasing tidal range). In this study, we characterize the recent morphologic evolution of the German part of the Wadden Sea for the time period 1998 to 2016 based on a large dataset of available digital elevation models. A sediment budget analysis reveals that the Wadden Sea is accumulating sediment. Changes in the ratio of intertidal to subtidal ...[more]

PMID: 31243324

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Project description:Members of the phylum Planctomycetes are ubiquitous bacteria that dwell in aquatic and terrestrial habitats. While planctomycetal species are important players in the global carbon and nitrogen cycle, this phylum is still undersampled and only few genome sequences are available. Here we describe strain NH11T, a novel planctomycete obtained from a crustacean shell (Wadden Sea, Germany). The phylogenetically closest related cultivated species is Gimesia maris, sharing only 87% 16S rRNA sequence identity. Previous isolation attempts have mostly yielded members of the genus Rhodopirellula from water of the German North Sea. On the other hand, only one axenic culture of the genus Pirellula was obtained from a crustacean thus far. However, the 16S rRNA gene sequence of strain NH11T shares only 80% sequence identity with the closest relative of both genera, Rhodopirellula and Pirellula. Thus, strain NH11T is unique in terms of origin and phylogeny. While the pear to ovoid shaped cells of strain NH11T are typical planctomycetal, light-, and electron microscopic observations point toward an unusual variation of cell division through budding: during the division process daughter- and mother cells are connected by an unseen thin tubular-like structure. Furthermore, the periplasmic space of strain NH11T was unusually enlarged and differed from previously known planctomycetes. The complete genome of strain NH11T, with almost 9 Mb in size, is among the largest planctomycetal genomes sequenced thus far, but harbors only 6645 protein-coding genes. The acquisition of genomic components by horizontal gene transfer is indicated by the presence of numerous putative genomic islands. Strikingly, 45 "giant genes" were found within the genome of NH11T. Subsequent analysis of all available planctomycetal genomes revealed that Planctomycetes as such are especially rich in "giant genes". Furthermore, Multilocus Sequence Analysis (MLSA) tree reconstruction support the phylogenetic distance of strain NH11T from other cultivated Planctomycetes of the same phylogenetic cluster. Thus, based on our findings, we propose to classify strain NH11T as Fuerstia marisgermanicae gen. nov., sp. nov., with the type strain NH11T, within the phylum Planctomycetes.

Project description:Recently, four Thiomicrospira strains were isolated from a coastal mud flat of the German Wadden Sea (T. Brinkhoff and G. Muyzer, Appl. Environ. Microbiol. 63:3789-3796, 1997). Here we describe the use of a polyphasic approach to investigate the functional role of these closely related bacteria. Microsensor measurements showed that there was oxygen penetration into the sediment to a depth of about 2.0 mm. The pH decreased from 8.15 in the overlaying water to a minimum value of 7.3 at a depth of 1.2 mm. Further down in the sediment the pH increased to about 7.8 and remained constant. Most-probable-number (MPN) counts of chemolithoautotrophic sulfur-oxidizing bacteria revealed nearly constant numbers along the vertical profile; the cell concentration ranged from 0.93 x 10(5) to 9.3 x 10(5) cells per g of sediment. A specific PCR was used to detect the presence of Thiomicrospira cells in the MPN count preparations and to determine their 16S rRNA sequences. The concentration of Thiomicrospira cells did not decrease with depth. It was found that Thiomicrospira strains were not dominant sulfur-oxidizing bacteria in this habitat. Denaturing gradient gel electrophoresis (DGGE) of PCR-amplified 16S ribosomal DNA fragments followed by hybridization analysis with a genus-specific oligonucleotide probe revealed the diversity of Thiomicrospira strains in the MPN cultures. Sequence analysis of the highest MPN dilutions in which the genus Thiomicrospira was detected revealed that there were four clusters of several closely related sequences. Only one of the 10 Thiomicrospira sequences retrieved was related to sequences of known isolates from the same habitat. Slot blot hybridization of rRNA isolated from different sediment layers showed that, in contrast to the concentration of Thiomicrospira cells, the concentration of Thiomicrospira-specific rRNA decreased rapidly in the region below the oxic layer of the sediment. This study revealed the enormous sequence diversity of closely related microorganisms present in one habitat, which so far has been found only by sequencing molecular isolates. In addition, it showed that most of the Thiomicrospira populations in the sediment studied were quiescent.

Dataset Information

Recent morphologic evolution of the German Wadden Sea.

Publications

Recent morphologic evolution of the German Wadden Sea.

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