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Solving self-absorption in fluorescence.

ABSTRACT: One of the most common types of experiment in X-ray absorption spectroscopy (XAS) measures the secondary inelastically scattered fluorescence photon. This widespread approach has a dominant systematic of self-absorption of the fluorescence photon. The large impact of self-absorption compromises accuracy, analysis and insight. Presented here is a detailed self-consistent method to correct for self-absorption and attenuation in fluorescence X-ray measurements. This method and the resulting software package can be applied to any fluorescence data, for XAS or any other experimental approach detecting fluorescence or inelastically scattered radiation, leading to a general solution applicable to a wide range of experimental investigations. The high intrinsic accuracy of the processed data allows these features to be well modelled and yields deeper potential insight.

SUBMITTER: Trevorah RM

PROVIDER: S-EPMC6608621 | biostudies-literature | 2019 Jul

REPOSITORIES: biostudies-literature

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Solving self-absorption in fluorescence.

Trevorah Ryan M RM Chantler Christopher T CT Schalken Martin J MJ

IUCrJ 20190510 Pt 4

One of the most common types of experiment in X-ray absorption spectroscopy (XAS) measures the secondary inelastically scattered fluorescence photon. This widespread approach has a dominant systematic of self-absorption of the fluorescence photon. The large impact of self-absorption compromises accuracy, analysis and insight. Presented here is a detailed self-consistent method to correct for self-absorption and attenuation in fluorescence X-ray measurements. This method and the resulting softwar ...[more]

PMID: 31316803

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Project description:Live-cell fluorescence imaging of methanogenic archaea has been limited due to the strictly anoxic conditions required for growth and issues with autofluorescence associated with electron carriers in central metabolism. Here, we show that the fluorescence-activating and absorption-shifting tag (FAST) complexed with the fluorogenic ligand 4-hydroxy-3-methylbenzylidene-rhodanine (HMBR) overcomes these issues and displays robust fluorescence in Methanococcus maripaludis. We also describe a mechanism to visualize cells under anoxic conditions using a fluorescence microscope. Derivatives of FAST were successfully applied for protein abundance analysis, subcellular localization analysis, and determination of protein-protein interactions. FAST fusions to both formate dehydrogenase (Fdh) and F420-reducing hydrogenase (Fru) displayed increased fluorescence in cells grown on formate-containing medium, consistent with previous studies suggesting the increased abundance of these proteins in the absence of H2. Additionally, FAST fusions to both Fru and the ATPase associated with the archaellum (FlaI) showed a membrane localization in single cells observed using anoxic fluorescence microscopy. Finally, a split reporter translationally fused to the alpha and beta subunits of Fdh reconstituted a functionally fluorescent molecule in vivo via bimolecular fluorescence complementation. Together, these observations demonstrate the utility of FAST as a tool for studying members of the methanogenic archaea. IMPORTANCE Methanogenic archaea are important members of anaerobic microbial communities where they catalyze essential reactions in the degradation of organic matter. Developing additional tools for studying the cell biology of these organisms is essential to understanding them at a mechanistic level. Here, we show that FAST, in combination with the fluorogenic ligand HMBR, can be used to monitor protein dynamics in live cells of M. maripaludis. The application of FAST holds promise for future studies focused on the metabolism and physiology of methanogenic archaea.

Dataset Information

Solving self-absorption in fluorescence.

Publications

Solving self-absorption in fluorescence.

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