Polymorphisms rs693421 and rs2499601 at locus 1q43 and their haplotypes are not associated with primary open-angle glaucoma: a case-control study.

ABSTRACT: OBJECTIVE:The genetic spectrum of primary open-angle glaucoma (POAG) in middle-eastern Saudi's is still elusive. To this end, we investigated an association between rs693421, rs2499601 and their haplotypes at chromosome 1q43 locus with POAG and its related clinical phenotypes. Genotyping was performed with TaqMan® assays. Haplotypes and their interaction analysis were carried out by SHEsis and SNPStats online tools. RESULTS:The minor "T" allele frequency of rs693421 was 0.48 in controls and 0.52 in cases (odds ratio (OR)?=?1.15, 95% confidence interval (CI) 0.85-1.54, p?=?0.368). Similarly, for rs2499601, the minor "C" allele frequency was 0.49 in controls as compared to 0.53 in cases (OR?=?1.19, 95% CI 0.89-1.60, p?=?0.236). Besides, genotype distribution for both these polymorphisms was also not significant in additive, dominant and recessive models. rs693421 and rs2499601, showed significant linkage disequilibrium (D' statistics?=?0.69, p?

SUBMITTER: Kondkar AA 

PROVIDER: S-EPMC6651941 | biostudies-literature | 2019 Jul

REPOSITORIES: biostudies-literature