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Genomics of rapid ecological divergence and parallel adaptation in four tidal marsh sparrows.

ABSTRACT: Theory suggests that different taxa having colonized a similar, challenging environment will show parallel or lineage-specific adaptations to shared selection pressures, but empirical examples of parallel evolution in independent taxa are exceedingly rare. We employed comparative genomics to identify parallel and lineage-specific responses to selection within and among four species of North American sparrows that represent four independent, post-Pleistocene colonization events by an ancestral, upland subspecies and a derived salt marsh specialist. We identified multiple cases of parallel adaptation in these independent comparisons following salt marsh colonization, including selection of 12 candidate genes linked to osmoregulation. In addition to detecting shared genetic targets of selection across multiple comparisons, we found many novel, species-specific signatures of selection, including evidence of selection of loci associated with both physiological and behavioral mechanisms of osmoregulation. Demographic reconstructions of all four species highlighted their recent divergence and small effective population sizes, as expected given their rapid radiation into saline environments. Our results highlight the interplay of both shared and lineage-specific selection pressures in the colonization of a biotically and abiotically challenging habitat and confirm theoretical expectations that steep environmental clines can drive repeated and rapid evolutionary diversification in birds.

SUBMITTER: Walsh J

PROVIDER: S-EPMC6675146 | biostudies-literature | 2019 Aug

REPOSITORIES: biostudies-literature

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Genomics of rapid ecological divergence and parallel adaptation in four tidal marsh sparrows.

Walsh Jennifer J Benham Phred M PM Deane-Coe Petra E PE Arcese Peter P Butcher Bronwyn G BG Chan Yvonne L YL Cheviron Zachary A ZA Elphick Chris S CS Kovach Adrienne I AI Olsen Brian J BJ Shriver W Gregory WG Winder Virginia L VL Lovette Irby J IJ

Evolution letters 20190716 4

Theory suggests that different taxa having colonized a similar, challenging environment will show parallel or lineage-specific adaptations to shared selection pressures, but empirical examples of parallel evolution in independent taxa are exceedingly rare. We employed comparative genomics to identify parallel and lineage-specific responses to selection within and among four species of North American sparrows that represent four independent, post-Pleistocene colonization events by an ancestral, u ...[more]

PMID: 31388443

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Project description:Over 17 years, species richness and seed bank densities, initially very high, decreased, and Phragmites australis, an invasive, came to dominate the seed bank and vegetation. Despite a persistent and varied seed bank, Phragmites will likely preclude contributions from the seed bank or newly dispersed propagules to vegetation development. Background and aims A created tidal freshwater wetland, with no extant seed bank, was monitored to evaluate the colonization potential of a tidal river, vegetation and seed bank changes, and also species persistence. Methodology The 32.3-ha mitigation, adjacent to the Delaware River, was completed in 1994. Three sites, with differing completion dates, and three locations (channel edge, midpoint, upland edge) were sampled. From 1995 to 1999, surveys permitted a view of initial dynamics involving soil seed bank density or field vegetation cover, as well as species composition. Vegetation was monitored through 2011, and in 2011 a seed bank survey was also undertaken. Principal results Between 1995 and 1999, 177 species emerged from soil samples, with a maximum of 32.3 ± 1.8 (SE)/sample. Eight species were added in 2011, indicating continuing dispersal and input. Comparing species richness across three sites for midpoint locations, 2011 totals and species/sample were lower (61–90 % and 53–72 %, respectively) than 1998 values. In vegetation plots during the first 5 years, 72 cover species were present. In 2011, there were 44; 14 were new and the majority (13) were woody and part of an overhanging edge canopy. Dispersal was primarily via water. Overall, the trend was towards lower seed bank densities, except for Mikania scandens and Phragmites australis which had higher densities, as well as cover values. Species richness also decreased. Species varied in persistence in the seed bank and vegetation, and among sites and with location. Initial site colonization differences were still apparent in 2011 seed bank samples. While present, Lythrum salicaria did not reduce species richness; Phragmites, in contrast, had substantial impact. Conclusions The single most important change was an increase in Phragmites in the vegetation. Vegetation dynamics are now determined by this species, and the persistent seed bank and continuing dispersal input have little obvious future in vegetation development.

Dataset Information

Genomics of rapid ecological divergence and parallel adaptation in four tidal marsh sparrows.

Publications

Genomics of rapid ecological divergence and parallel adaptation in four tidal marsh sparrows.

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