Dataset Information

Taxonomic, biological and geographical traits of species in a coastal dune flora in the southeastern Cape Floristic Region: regional and global comparisons.

ABSTRACT: In Mediterranean-Climate Ecosystems (MCEs), Holocene coastal dunes comprise small, fragmented and dynamic features which have nutritionally imbalanced and excessively drained, droughty, sandy soils. These characteristics, along with summer drought and salt-laden winds, pose many challenges for plant colonization and persistence. Consequently, MCE dune floras are likely to be distinctive with a high proportion of habitat specialists and strong convergence in growth form mixes. Very little research has compared the species traits of dune floras within and across MCEs. This paper contributes to filling that gap. Here, we analyze the taxonomic, biological and geographical traits for all 402 species in a flora from a dune landscape (Cape St Francis) in the southeastern Cape Floristic Region (CFR) and compare patterns with the trait profiles of other dune floras at a regional (CFR) and global (MCE) scale. Within the CFR, the southeastern (all-year-rainfall) flora at Cape St Francis had a similar trait profile to western (winter-rainfall) dune floras, except for having a lower representation of species belonging to CFR-endemic clades, and higher number of species associated with tropical lineages. The St Francis flora, in common with other CFR and MCE floras, was dominated by members of the Asteraceae, Fabaceae and Poaceae. Some 40% of the St Francis flora was endemic to the CFR, typical of the high rate of MCE-level endemism elsewhere in the CFR, and in other MCEs. About 30% of the flora was confined to calcareous sand, a value typical for many other MCE sites. The St Francis flora, as well as other CFR dune floras, differs from those of other MCEs by having many species associated with shrubby lineages, and by the relatively high incidence of species associated with tropical lineages. The growth form profile of the St Francis and other CFR floras shows strongest similarity with that of Australian MCE dunes in that in both regions, evergreen hemicryptophytes and shrubs share dominance, and annuals are floristically and ecologically subordinate. The least similar of MCEs to the St Francis trait profile is the Mediterranean Basin where annuals are the most frequent growth form while shrubs are subordinate. California and Chile dune floras appear to occupy an intermediate position, in terms of growth form mix, between the Cape and Australia on the one hand, where dune floras have retained features typical of nutrient-poor soils, and the Mediterranean Basin, where dwarf, deciduous shrubs and annuals dominate the life form spectrum. All MCE dunes are threatened by alien plants, infrastructure development, tourism demands and rising sea levels. The high incidence of species of conservation concern in CFR dune floras underestimates the exponentially increasing threats to their habitats, which are already historically at a much-reduced extent. All remaining coastal dune habitat in the CFR, and probably in other MCEs, should be conserved in their entirety.

SUBMITTER: Cowling RM

PROVIDER: S-EPMC6679649 | biostudies-literature | 2019

REPOSITORIES: biostudies-literature

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Taxonomic, biological and geographical traits of species in a coastal dune flora in the southeastern Cape Floristic Region: regional and global comparisons.

Cowling Richard M RM Logie Caryl C Brady Joan J Middleton Margie M Grobler B Adriaan BA

PeerJ 20190731

In Mediterranean-Climate Ecosystems (MCEs), Holocene coastal dunes comprise small, fragmented and dynamic features which have nutritionally imbalanced and excessively drained, droughty, sandy soils. These characteristics, along with summer drought and salt-laden winds, pose many challenges for plant colonization and persistence. Consequently, MCE dune floras are likely to be distinctive with a high proportion of habitat specialists and strong convergence in growth form mixes. Very little researc ...[more]

PMID: 31396438

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Project description:The Cape Floristic Region (CFR) is globally recognized as a hotspot of plant diversity and endemism. Much of this diversity stems from radiations associated with infertile acid sands derived from sandstones of the geologically ancient Cape Fold Belt. These ancient montane floras acted as the source for most subsequent radiations on the Cape lowlands during the Oligocene (on silcretes) and Mio-Pliocene (on shales). The geomorphic evolution of the CFR during the Plio-Pleistocene led to the first large-scale occurrence of calcareous substrata (coastal dunes and calcarenites) along the Cape coast, providing novel habitats for plant colonization and ensuing evolution of the Cape coastal flora-the most recent diversification event in the Cape. Few studies have investigated the CFR's dune and calcarenite floras, and fewer still have done so in an evolutionary context. Here, we present a unified flora of these coastal calcareous habitats of the CFR and analyze the taxonomic, biological and geographical traits of its component species to gain insights into its assembly. The Cape coastal flora, comprising 1,365 species, is taxonomically dominated by the Asteraceae, Fabaceae and Iridaceae, with Erica, Aspalathus and Agathosma being the most speciose genera. In terms of growth-form mix, there is a roughly equal split between herbaceous and woody species, the former dominated by geophytes and forbs, the latter by dwarf and low shrubs. Species associated with the Fynbos biome constitute the bulk of the flora, while the Subtropical Thicket and Wetland biomes also house a substantial number of species. The Cape coastal flora is a distinctly southern African assemblage, with 61% of species belonging to southern African lineages (including 35% of species with Cape affinity) and 59% being endemic to the CFR. Unique among floras from the Cape and coastal Mediterranean-climate regions is the relatively high proportion of species associated with tropical lineages, several of which are restricted to calcareous substrata of the CFR. The endemic, calcicolous component of the flora, constituting 40% of species, represents 6% of the Cape's regional plant diversity-high tallies compared to other biodiversity hotspots. Most coastal-flora endemics emerged during the Plio-Pleistocene as a product of ecological speciation upon the colonization of calcareous substrata, with the calcifugous fynbos floras of montane acid substrata being the most significant source of this diversification, especially on the typically shallow soils of calcarenite landscapes. On the other hand, renosterveld floras, associated with edaphically benign soils that are widespread on the CFR lowlands, have not been a major source of lineages to the coastal flora. Our findings suggest that, over and above the strong pH gradient that exists on calcareous substrata, soil depth and texture may act as important edaphic filters to incorporating lineages from floras on juxtaposed substrata in the CFR.

Project description:The distribution of genetic variation is determined through the interaction of life history, morphology and habitat specificity of a species in conjunction with landscape structure. While numerous studies have investigated this interplay of factors in species inhabiting aquatic, riverine, terrestrial, arboreal and saxicolous systems, the fossorial system has remained largely unexplored. In this study we attempt to elucidate the impacts of a subterranean lifestyle coupled with a heterogeneous landscape on genetic partitioning by using a subterranean mammal species, the Cape dune mole-rat (Bathyergus suillus), as our model. Bathyergus suillus is one of a few mammal species endemic to the Cape Floristic Region (CFR) of the Western Cape of South Africa. Its distribution is fragmented by rivers and mountains; both geographic phenomena that may act as geographical barriers to gene-flow. Using two mitochondrial fragments (cytochrome b and control region) as well as nine microsatellite loci, we determined the phylogeographic structure and gene-flow patterns at two different spatial scales (local and regional). Furthermore, we investigated genetic differentiation between populations and applied Bayesian clustering and assignment approaches to our data. Nearly every population formed a genetically unique entity with significant genetic structure evident across geographic barriers such as rivers (Berg, Verlorenvlei, Breede and Gourits Rivers), mountains (Piketberg and Hottentots Holland Mountains) and with geographic distance at both spatial scales. Surprisingly, B. suillus was found to be paraphyletic with respect to its sister species, B. janetta-a result largely overlooked by previous studies on these taxa. A systematic revision of the genus Bathyergus is therefore necessary. This study provides a valuable insight into how the biology, life-history and habitat specificity of animals inhabiting a fossorial system may act in concert with the structure of the surrounding landscape to influence genetic distinctiveness and ultimately speciation.

Project description:In June 2017, extreme fires along the southern Cape coast of South Africa burnt native fynbos and thicket vegetation and caused extensive damage to plantations and residential properties. Invasive alien plants (IAPs) occur commonly in the area and were thought to have changed the behaviour of these fires through their modification of fuel properties relative to that of native vegetation. This study experimentally compared various measures of flammability across groups of native and alien invasive shrub species in relation to their fuel traits. Live plant shoots of 30 species (10 species each of native fynbos, native thicket, and IAPs) were sampled to measure live fuel moisture, dry biomass, fuel bed porosity and the proportions of fine-, coarse- and dead fuels. These shoots were burnt experimentally, and flammability measured in terms of maximum temperature (combustibility), completeness of burn (consumability), and time-to-ignition (ignitability). Multiple regression models were used to assess the relationships between flammability responses and fuel traits, while the Kruskal-Wallis H test was used to establish if differences existed in flammability measures and fuel traits among the vegetation groups. Dry biomass significantly enhanced, while live fuel moisture significantly reduced, maximum temperature, whereas the proportion of fine fuels significantly increased completeness of burn. Unlike other similar studies, the proportion of dead fuels and fuel bed porosity were not retained by any of the models to account for variation in flammability. Species of fynbos and IAPs generally exhibited greater flammability in the form of higher completeness of burn and more rapid ignition than species of thicket. Little distinction in flammability and fuel traits could be made between species of fynbos and IAPs, except that fynbos species had a greater proportion of fine fuels. Thicket species had higher proportions of coarse fuels and greater dry biomass (~fuel loading) than species of fynbos and IAPs. Live fuel moisture did not differ among the vegetation groups, contrary to the literature often ascribing variation in flammability to fuel moisture differences. The fuel traits investigated only explained 21-53% of the variation in flammability and large variation was evident among species within vegetation groups suggesting that species-specific and in situ community-level investigations are warranted, particularly in regard fuel moisture and chemical contents.

Project description:BackgroundGlobally, and in the Cape Floristic Region of South Africa, extreme fires have become more common in recent years. Such fires pose societal and ecological threats and have inter alia been attributed to climate change and modification of fuels due to alien plant invasions. Understanding the flammability of different types of indigenous and invasive alien vegetation is essential to develop fire risk prevention and mitigation strategies. We assessed the flammability of 30 species of indigenous and invasive alien plants commonly occurring in coastal fynbos and thicket shrublands in relation to varying fire weather conditions.MethodsFresh plant shoots were sampled and burnt experimentally across diverse fire weather conditions to measure flammability in relation to fire weather conditions, live fuel moisture, fuel load and vegetation grouping (fynbos, thicket and invasive alien plants). Flammability measures considered were: burn intensity, completeness of burn, time-to-ignition, and the likelihood of spontaneous ignition. We also investigated whether the drying of plant shoots (simulating drought conditions) differentially affected the flammability of vegetation groups.ResultsFire weather conditions enhanced all measures of flammability, whereas live fuel moisture reduced burn intensity and completeness of burn. Live fuel moisture was not significantly correlated with fire weather, suggesting that the mechanism through which fire weather enhances flammability is not live fuel moisture. It furthermore implies that the importance of live fuel moisture for flammability of evergreen shrublands rests on inter-specific and inter-vegetation type differences in fuel moisture, rather than short-term intra-specific fluctuation in live fuel moisture in response to weather conditions. Fuel load significantly increased burn intensity, while reducing ignitability. Although fire weather, live fuel moisture, and fuel load had significant effects on flammability measures, vegetation and species differences accounted for most of the variation. Flammability was generally highest in invasive alien plants, intermediate in fynbos, and lowest in thicket. Fynbos ignited rapidly and burnt completely, whereas thicket was slow to ignite and burnt incompletely. Invasive alien plants were slow to ignite, but burnt with the highest intensity, potentially due to volatile organic composition. The drying of samples resulted in increases in all measures of flammability that were comparable among vegetation groups. Flammability, and by implication fire risk, should thus not increase disproportionately in one vegetation group compared to another under drought conditions-unless the production of dead fuels is disproportionate among vegetation groups. Thus, we suggest that the dead:live fuel ratio is a potentially useful indicator of flammability of evergreen shrublands and that proxies for this ratio need to be investigated for incorporation into fire danger indices.

Project description:BACKGROUND: DNA barcoding is expected to be an effective identification tool for organisms with heteromorphic generations such as pteridophytes, which possess a morphologically simple gametophyte generation. Although a reference data set including complete coverage of the target local flora/fauna is necessary for accurate identification, DNA barcode studies including such rich taxonomic sampling on a countrywide scale are lacking. METHODOLOGY/PRINCIPAL FINDINGS: The Japanese pteridophyte flora (733 taxa including subspecies and varieties) was used to test the utility of two plastid DNA barcode regions (rbcL and trnH-psbA) with the intention of developing an identification system for native gametophytes. DNA sequences were obtained from each of 689 (94.0%) taxa for rbcL and 617 (84.2%) taxa for trnH-psbA. Mean interspecific divergence values across all taxon pairs (K2P genetic distances) did not reveal a significant difference in rate between trnH-psbA and rbcL, but mean K2P distances of each genus showed significant heterogeneity according to systematic position. The minimum fail rate of taxon discrimination in an identification test using BLAST (12.52%) was obtained when rbcL and trnH-psbA were combined, and became lower in datasets excluding infraspecific taxa or apogamous taxa, or including sexual diploids only. CONCLUSIONS/SIGNIFICANCE: This study demonstrates the overall effectiveness of DNA barcodes for species identification in the Japanese pteridophyte flora. Although this flora is characterized by a high occurrence of apogamous taxa that pose a serious challenge to identification using DNA barcodes, such taxa are limited to a small number of genera, and only minimally detract from the overall success rate. In the case that a query sequence is matched to a known apogamous genus, routine species identification may not be possible. Otherwise, DNA barcoding is a practical tool for identification of most Japanese pteridophytes, and is especially anticipated to be helpful for identification of non-hybridizing gametophytes.

Project description:Background and aimsGlobal climate change includes shifts in temperature and precipitation, increases in the frequency and intensity of extreme weather events and sea level rise, which will drastically impact coastal ecosystems. The aim of this study is to quantify salinity tolerance and to identify physiological mechanisms underlying tolerance across wholeplant ontogeny in two widespread native coastal plant species in Hawai'i, Jacquemontia sandwicensis (Convolvulaceae) and Sida fallax (Malvaceae).MethodsAt the seed, seedling, juvenile and mature ontogenetic stages, plants were exposed to high salinity watering treatments. Tolerance was assayed as the performance of stressed compared with control plants using multiple fitness metrics, including germination, survival, growth and reproduction. Potential physiological mechanisms underlying salinity tolerance were measured at each ontogenetic stage, including: photosynthesis and stomatal conductance rates, leaf thickness, leaf mass per area and biomass allocation.Key resultsSalinity tolerance varied between species and across ontogeny but, overall, salinity tolerance increased across ontogeny. For both species, salinity exposure delayed flowering. Physiological and morphological leaf traits shifted across plant ontogeny and were highly plastic in response to salinity. Traits enhancing performance under high salinity varied across ontogeny and between species. For J. sandwicensis, water use efficiency enhanced growth for juvenile plants exposed to high salinity, while chlorophyll content positively influenced plant growth under salinity in the mature stage. For S. fallax, transpiration enhanced plant growth only under low salinity early in ontogeny; high transpiration constrained growth under high salinity across all ontogenetic stages.ConclusionsThat salinity effects vary across ontogenetic stages indicates that demographic consequences of sea level rise and coastal flooding will influence population dynamics in complex ways. Furthermore, even coastal dune plants presumably adapted to tolerate salinity demonstrate reduced ecophysiological performance, growth and reproduction under increased salinity, highlighting the conservation importance of experimental work to better project climate change effects on plants.

Dataset Information

Taxonomic, biological and geographical traits of species in a coastal dune flora in the southeastern Cape Floristic Region: regional and global comparisons.

Publications

Taxonomic, biological and geographical traits of species in a coastal dune flora in the southeastern Cape Floristic Region: regional and global comparisons.

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