Joint analysis of heterogeneous single-cell RNA-seq dataset collections.
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ABSTRACT:
SUBMITTER: Barkas N
PROVIDER: S-EPMC6684315 | biostudies-literature | 2019 Aug
REPOSITORIES: biostudies-literature
Publications
Joint analysis of heterogeneous single-cell RNA-seq dataset collections.
Barkas Nikolas N Petukhov Viktor V Nikolaeva Daria D Lozinsky Yaroslav Y Demharter Samuel S Khodosevich Konstantin K Kharchenko Peter V PV
Nature methods 20190715 8
Single-cell RNA sequencing is often applied in study designs that include multiple individuals, conditions or tissues. To identify recurrent cell subpopulations in such heterogeneous collections, we developed Conos, an approach that relies on multiple plausible inter-sample mappings to construct a global graph connecting all measured cells. The graph enables identification of recurrent cell clusters and propagation of information between datasets in multi-sample or atlas-scale collections. ...[more]
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