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Personalized Epigenome Remodeling Under Biochemical and Psychological Changes During Long-Term Isolation Environment.

ABSTRACT: It has been reported that several aspects of human health could be disturbed during a long-term isolated environment (for instance, the Mars-500 mission), including psychiatric disorders, circadian disruption, temporal dynamics of gut microbiota, immune responses, and physical-activity-related neuromuscular performance. Nevertheless, the mechanisms underlying these disturbances and the interactions among different aspects of human adaptation to extreme environments remain to be elucidated. Epigenetic features, like DNA methylation, might be a linking mechanism that explains the involvement of environmental factors between the human genome and the outcome of health. We conducted an exploration of personalized longitudinal DNA methylation patterns of the peripheral whole blood cells, profiling six subjects across six sampling points in the Mars-500 mission. Specifically, we developed a Personalized Epigenetic-Phenotype Synchronization Analysis (PeSa) algorithm to explore glucose- and mood-state-synchronized DNA methylation sites, focusing on finding the dynamic associations between epigenetic patterns and phenotypes in each individual, and exploring the underling epigenetic connections between glucose and mood-state disturbance. Results showed that DMPs (differentially methylated-probes) were significantly enriched in pathways related to glucose metabolism (Type II diabetes mellitus pathway), mood state (Long-term depression) and circadian rhythm (Circadian entrainment pathway) during the mission. Furthermore, our data revealed individualized glucose-synchronized and mood-state-synchronized DNA methylation sites, and PTPRN2 was found to be associated with both glucose and mood state disturbances across all six subjects. Our findings suggest that personalized phenotype-synchronized epigenetic features could reflect the effects on the human body, including the disturbances of glucose and mood-states. The association analysis of DNA methylation and phenotypes, like the PeSa analysis, could provide new possibilities in understanding the intrinsic relationship between phenotypic changes of the human body adapting to long-term isolation environmental factors.

SUBMITTER: Liang F

PROVIDER: S-EPMC6684777 | biostudies-literature | 2019

REPOSITORIES: biostudies-literature

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Personalized Epigenome Remodeling Under Biochemical and Psychological Changes During Long-Term Isolation Environment.

Liang Fengji F Lv Ke K Wang Yue Y Yuan Yanhong Y Lu Liang L Feng Qiang Q Jing Xiaolu X Wang Honghui H Liu Changning C Rayner Simon S Ling Shukuan S Chen Hailong H Wan Yumin Y Zhou Wanlong W He Li L Wu Bin B Qu Lina L Chen Shanguang S Xiong Jianghui J Li Yinghui Y

Frontiers in physiology 20190731

It has been reported that several aspects of human health could be disturbed during a long-term isolated environment (for instance, the Mars-500 mission), including psychiatric disorders, circadian disruption, temporal dynamics of gut microbiota, immune responses, and physical-activity-related neuromuscular performance. Nevertheless, the mechanisms underlying these disturbances and the interactions among different aspects of human adaptation to extreme environments remain to be elucidated. Epige ...[more]

PMID: 31417412

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Project description:Increasing concentrations of ground-level ozone (O3) exert significant impacts on the plants, but there is limited data for belowground processes. We studied the effects of long-term exposure of elevated O3 (EO3) on plant growth parameters (plant height and biomass) and biochemical parameters (nutrients, microbial biomass and enzymatic activities) of rhizospheric soil of leguminous tree species Leucaena leucocephala. L. leucocephala seedlings were grown under ambient O3 (AO3) and EO3 (+20 ppb above ambient) under Free Air Ozone Concentration Enrichment (O3-FACE) facility and changes in plant growth and their rhizospheric soil properties were studied during 6, 12, 18 and 24 months of EO3 exposure. L. leucocephala showed significant reductions in shoot length, root biomass, shoot biomass, leaf biomass and total biomass during 12, 18 and 24 months of exposure to EO3. Total nutrients in rhizospheric soil like carbon and phosphorus were significantly reduced after 24 months of EO3 exposure. Most of the available nutrients showed significant reduction after 6, 12 and 24 months of EO3 exposure. A significant decrease was apparent in microbial biomass carbon, nitrogen and phosphorus after 6, 12, 18 and 24 months of EO3 treatment. Significant reductions were observed in extracellular enzymatic activities (dehydrogenase, alkaline phosphatase, β-glycosidase, fluorescein diacetate, arylsulfatase, cellulase and protease) of soil after 6, 12 and 24 months of EO3 exposure. These results suggest that increasing O3 concentrations will directly impact L. leucocephala growth as well as have indirect impact on the nutrient contents (C, N, and P), microbial biomass and extracellular enzymatic activities of rhizospheric soil of L. leucocephala. Our results suggest that continuous increase in O3 concentrations will have serious implications for aboveground plant growth and belowground soil fertility in this region considered as O3 hotspot.Supplementary informationThe online version contains supplementary material available at 10.1007/s13205-022-03215-1.

Dataset Information

Personalized Epigenome Remodeling Under Biochemical and Psychological Changes During Long-Term Isolation Environment.

Publications

Personalized Epigenome Remodeling Under Biochemical and Psychological Changes During Long-Term Isolation Environment.

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