Browse
Submit Data
Databases
API
Help

Dataset Information

23 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Complete Genome Sequence and Methylome Analysis of Thermoactinomyces vulgaris 2H.

ABSTRACT: Here, we report the complete genome sequence and full methylome analysis of a newly isolated, aerobic, thermophilic, Gram-positive actinomycete, a strain of Thermoactinomyces vulgaris designated strain 2H.

SUBMITTER: Mankai H

PROVIDER: S-EPMC6687926 | biostudies-literature | 2019 Aug

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

Complete Genome Sequence and Methylome Analysis of Thermoactinomyces vulgaris 2H.

Mankai Houda H Anton Brian P BP Wu Victoria V Vincze Tamas T Roberts Richard J RJ Limam Ferid F Fomenkov Alexey A

Microbiology resource announcements 20190808 32

Here, we report the complete genome sequence and full methylome analysis of a newly isolated, aerobic, thermophilic, Gram-positive actinomycete, a strain of <i>Thermoactinomyces vulgaris</i> designated strain 2H. ...[more]

PMID: 31395639

Similar Datasets

Complete Genome Sequence of Thermoactinomyces vulgaris Strain CDF, a Thermophilic Bacterium Capable of Degrading Chicken Feathers.

Project description:Thermoactinomyces vulgaris strain CDF was isolated from soil and shown to have the ability to degrade chicken feathers at high temperatures. Here, we report the complete genome sequence of this bacterium, which is 2,595,509 bp long with 2,642 predicted genes and an average G+C content of 48.14%.

| S-EPMC6624764 | biostudies-literature

Thermoactinomyces vulgaris strain:2H

Project description:Thermoactinomyces vulgaris strain:2H Genome sequencing

| PRJNA534300 | ENA

Complete Genome Sequence and Methylome Analysis of Deinococcus wulumuqiensis 479.

Project description:Deinococcus wulumuqiensis 479 (formerly known as Deinococcus radiodurans 479) is the original source strain for the restriction enzyme DrdI. Its complete sequence and full methylome were determined using Pacific Biosciences single-molecule real-time (SMRT) sequencing.

| S-EPMC6430315 | biostudies-literature

Complete Genome Sequence and Methylome Analysis of Bacillus caldolyticus NEB414.

Project description:Bacillus caldolyticus NEB414 is the original source strain for the restriction enzyme BclI. Its complete sequence and full methylome were determined using single-molecule real-time sequencing.

| S-EPMC5805893 | biostudies-literature

Complete genome sequence and methylome analysis of bacillus strain x1.

Project description:Bacillus strain X1 is the source strain for the restriction enzyme BstXI. Its complete sequence and full methylome was determined using single-molecule real-time (SMRT) sequencing.

| S-EPMC4335341 | biostudies-literature

Complete Genome Sequence and Methylome Analysis of Acinetobacter calcoaceticus 65.

Project description:Acinetobacter calcoaceticus 65 is the original source strain for the restriction enzyme Acc65I. Its complete sequence and full methylome were determined using single-molecule real-time (SMRT) sequencing.

| S-EPMC5364224 | biostudies-literature

Complete Genome Sequence and Methylome Analysis of Bacillus globigii ATCC 49760.

Project description:Bacillus subtilis (Ehrenburg) Cohn ATCC 49760, deposited as Bacillus globigii, is the source strain for the restriction enzymes BglI and BglII. Its complete sequence and full methylome were determined using single-molecule real-time (SMRT) sequencing.

| S-EPMC4882945 | biostudies-literature

Complete Genome Sequence and Methylome Analysis of Sphaerotilus natans subsp. sulfidivorans D-507.

Project description:Sphaerotilus natans subsp. sulfidivorans D-507 is an environmental isolate from a sulfate spring in the northern Caucasus region of Russia. This heterotrophic bacterium is involved in the oxidation of reduced sulfur derivatives. This report includes the finished genome of this strain. In addition, we provide methylation data and the associated enzymes predicted to be responsible for each modified motif.

| S-EPMC6856280 | biostudies-literature

The complete chloroplast genome sequence of <i>Chlorella vulgaris</i> and phylogenetic analysis.

Project description:To understand the process of chloroplast genome evolution, information on repeated sequences, intergenic regions, and pseudogenes in chloroplast DNA is extremely helpful. Chlorella vulgaris is a fast-growing fresh-water microalga cultivated on the industrial scale for applications ranging from food to biofuel production. Structure and expression of the chloroplast genome have been studied in a number of plants. Gene content and the sequence of many genes in chloroplast DNA are relatively conserved among land plants and the Euglenophyta Euglena gracilis. The complete chloroplast genome sequence of C. vulgaris was characterized from Illumina pair-end sequencing. The chloroplast genome of C. vulgaris was 165,412 bp in length and the genome contains no large inverted repeat and has one copy of rRNA gene cluster consisting of 16S, 23S, and 5S rRNA genes. And the genes with two exons containing rrn23 (rRNA), trnl-UAA (tRNA), psba (CDS) and chlL (CDS). The genome contains 114 complete genes, including 78 protein-coding genes (45 protein-coding gene species), 33 tRNA genes (26 tRNA species), and 3 rRNA genes (3 rRNA species). The neighbour-joining phylogenetic analysis showed that C. vulgaris and C. vulgarisNC001865 clustered together as sisters to other Salvia species.

| S-EPMC7782169 | biostudies-literature

Complete Genome Sequence and Methylome Analysis of Aeromonas hydrophila Strain YL17, Isolated from a Compost Pile.

Project description:In this report, we announce the complete genome sequence of Aeromonas hydrophila strain YL17. Single-molecule real-time (SMRT) DNA sequencing was used to generate the complete genome sequence and the genome-wide DNA methylation profile of this environmental isolate. A total of five unique DNA methyltransferase recognition motifs were reported here.

| S-EPMC4777754 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data