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Paralog Studies Augment Gene Discovery: DDX and DHX Genes.


ABSTRACT: Members of a paralogous gene family in which variation in one gene is known to cause disease are eight times more likely to also be associated with human disease. Recent studies have elucidated DHX30 and DDX3X as genes for which pathogenic variant alleles are involved in neurodevelopmental disorders. We hypothesized that variants in paralogous genes encoding members of the DExD/H-box RNA helicase superfamily might also underlie developmental delay and/or intellectual disability (DD and/or ID) disease phenotypes. Here we describe 15 unrelated individuals who have DD and/or ID, central nervous system (CNS) dysfunction, vertebral anomalies, and dysmorphic features and were found to have probably damaging variants in DExD/H-box RNA helicase genes. In addition, these individuals exhibit a variety of other tissue and organ system involvement including ocular, outer ear, hearing, cardiac, and kidney tissues. Five individuals with homozygous (one), compound-heterozygous (two), or de novo (two) missense variants in DHX37 were identified by exome sequencing. We identified ten total individuals with missense variants in three other DDX/DHX paralogs: DHX16 (four individuals), DDX54 (three individuals), and DHX34 (three individuals). Most identified variants are rare, predicted to be damaging, and occur at conserved amino acid residues. Taken together, these 15 individuals implicate the DExD/H-box helicases in both dominantly and recessively inherited neurodevelopmental phenotypes and highlight the potential for more than one disease mechanism underlying these disorders.

SUBMITTER: Paine I 

PROVIDER: S-EPMC6698803 | biostudies-literature | 2019 Aug

REPOSITORIES: biostudies-literature

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Paralog Studies Augment Gene Discovery: DDX and DHX Genes.

Paine Ingrid I   Posey Jennifer E JE   Grochowski Christopher M CM   Jhangiani Shalini N SN   Rosenheck Sarah S   Kleyner Robert R   Marmorale Taylor T   Yoon Margaret M   Wang Kai K   Robison Reid R   Cappuccio Gerarda G   Pinelli Michele M   Magli Adriano A   Coban Akdemir Zeynep Z   Hui Joannie J   Yeung Wai Lan WL   Wong Bibiana K Y BKY   Ortega Lucia L   Bekheirnia Mir Reza MR   Bierhals Tatjana T   Hempel Maja M   Johannsen Jessika J   Santer René R   Aktas Dilek D   Alikasifoglu Mehmet M   Bozdogan Sevcan S   Aydin Hatip H   Karaca Ender E   Bayram Yavuz Y   Ityel Hadas H   Dorschner Michael M   White Janson J JJ   Wilichowski Ekkehard E   Wortmann Saskia B SB   Casella Erasmo B EB   Kitajima Joao Paulo JP   Kok Fernando F   Monteiro Fabiola F   Muzny Donna M DM   Bamshad Michael M   Gibbs Richard A RA   Sutton V Reid VR   Van Esch Hilde H   Brunetti-Pierri Nicola N   Hildebrandt Friedhelm F   Brautbar Ariel A   Van den Veyver Ignatia B IB   Glass Ian I   Lessel Davor D   Lyon Gholson J GJ   Lupski James R JR  

American journal of human genetics 20190627 2


Members of a paralogous gene family in which variation in one gene is known to cause disease are eight times more likely to also be associated with human disease. Recent studies have elucidated DHX30 and DDX3X as genes for which pathogenic variant alleles are involved in neurodevelopmental disorders. We hypothesized that variants in paralogous genes encoding members of the DExD/H-box RNA helicase superfamily might also underlie developmental delay and/or intellectual disability (DD and/or ID) di  ...[more]

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