Dataset Information

Evolutionary history and adaptation of a human pygmy population of Flores Island, Indonesia.

ABSTRACT: Flores Island, Indonesia, was inhabited by the small-bodied hominin species Homo floresiensis, which has an unknown evolutionary relationship to modern humans. This island is also home to an extant human pygmy population. Here we describe genome-scale single-nucleotide polymorphism data and whole-genome sequences from a contemporary human pygmy population living on Flores near the cave where H. floresiensis was found. The genomes of Flores pygmies reveal a complex history of admixture with Denisovans and Neanderthals but no evidence for gene flow with other archaic hominins. Modern individuals bear the signatures of recent positive selection encompassing the FADS (fatty acid desaturase) gene cluster, likely related to diet, and polygenic selection acting on standing variation that contributed to their short-stature phenotype. Thus, multiple independent instances of hominin insular dwarfism occurred on Flores.

SUBMITTER: Tucci S

PROVIDER: S-EPMC6709593 | biostudies-literature | 2018 Aug

REPOSITORIES: biostudies-literature

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Evolutionary history and adaptation of a human pygmy population of Flores Island, Indonesia.

Tucci Serena S Vohr Samuel H SH McCoy Rajiv C RC Vernot Benjamin B Robinson Matthew R MR Barbieri Chiara C Nelson Brad J BJ Nelson Brad J BJ Fu Wenqing W Purnomo Gludhug A GA Sudoyo Herawati H Eichler Evan E EE Barbujani Guido G Visscher Peter M PM Akey Joshua M JM Green Richard E RE

Science (New York, N.Y.) 20180801 6401

Flores Island, Indonesia, was inhabited by the small-bodied hominin species <i>Homo floresiensis</i>, which has an unknown evolutionary relationship to modern humans. This island is also home to an extant human pygmy population. Here we describe genome-scale single-nucleotide polymorphism data and whole-genome sequences from a contemporary human pygmy population living on Flores near the cave where <i>H. floresiensis</i> was found. The genomes of Flores pygmies reveal a complex history of admixt ...[more]

PMID: 30072539

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Project description:BackgroundIn many rural areas of tropical countries such as Indonesia, the prevalence of soil-transmitted helminths (STH) infections remains high. At the same time, the burden of allergic disorders in such rural areas is reported to be low and inversely associated with helminth infections. To reduce the morbidity and transmission of helminth infections, the world health organization recommends preventive treatment of school children by providing mass drug administration (MDA) with albendazole. Here, we had an opportunity to evaluate the prevalence of skin reactivity to allergens before and after albendazole treatment to get an indication of the possible impact of MDA on allergic sensitization.MethodsA study was conducted among 150 school children living in an area endemic for STH infections. Before and 1 year after anthelminthic treatment with albendazole, stool samples were examined for the presence of STH eggs, skin prick tests (SPT) for cockroach and house dust mites were performed, blood eosinophilia was assessed, and total immunoglobulin E (IgE) and C-reactive protein (CRP) were measured in plasma.ResultsAnthelminthic treatment significantly reduced the prevalence of STH from 19.6 before treatment to 6% after treatment (p < 0.001). Levels of total IgE (estimate: 0.30; 95% CI 0.22-0.42, p < 0.0001), CRP (estimate: 0.60; 95% CI 0.42-0.86, p = 0.006), and eosinophil counts (estimate: 0.70; 95% CI 0.61-0.80, p < 0.001) decreased significantly. The prevalence of SPT positivity increased from 18.7 to 32.7%. Multivariate analysis adjusted for confounding factors showed an increased risk of being SPT positive to any allergen (OR 3.04; 95% CI 1.338-6.919, p = 0.008).ConclusionsThis study indicates that 1 year of MDA with albendazole was associated with a reduced prevalence of STH infections. This study shows that the prevalence of allergic sensitization increases after 1 year of albendazole treatment. Placebo-controlled and larger studies are needed to further substantiate a role of deworming treatment in an increased risk of allergic sensitization.

Dataset Information

Evolutionary history and adaptation of a human pygmy population of Flores Island, Indonesia.

Publications

Evolutionary history and adaptation of a human pygmy population of Flores Island, Indonesia.

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