Reconstructing B-cell receptor sequences from short-read single-cell RNA sequencing with BRAPeS.
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ABSTRACT:
SUBMITTER: Afik S
PROVIDER: S-EPMC6709718 | biostudies-literature | 2019 Aug
REPOSITORIES: biostudies-literature
Publications
Reconstructing B-cell receptor sequences from short-read single-cell RNA sequencing with BRAPeS.
Afik Shaked S Raulet Gabriel G Yosef Nir N
Life science alliance 20190826 4
RNA sequencing of single B cells provides simultaneous measurements of the cell state and its antigen specificity as determined by the B-cell receptor (BCR). However, to uncover the latter, further reconstruction of the BCR sequence is needed. We present BRAPeS ("BCR Reconstruction Algorithm for Paired-end Single cells" ), an algorithm for reconstructing BCRs from short-read paired-end single-cell RNA sequencing. BRAPeS is accurate and achieves a high success rate even at very short (25 bp) read ...[more]
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