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Enumeration-screening method for the design of simple polygonal tensegrities.

ABSTRACT: Tensegrities, consisting of axially pre-compressed bars and pre-stretched strings, hold broad applications in the design of, for instance, architectures, soft robotics and metamaterials. In this paper, we propose an enumeration-screening method to design planar tensegrities of simple polygonal shapes. In such a polygonal tensegrity, the strings are joined pair-wise to form a simple polygon (a planar shape consisting of straight, non-intersecting line segments) and only one bar is added at each node. The total number of simple polygonal tensegrities designed by this scheme increases exponentially with the number of bars. Moreover, we demonstrate that each of these designed topologies can produce a self-equilibrated and stable tensegrity configuration. This work helps understand the topological features of simple polygonal tensegrities, which can be used as elementary cells to design some novel two- and three-dimensional tensegrity structures.

SUBMITTER: Zhang LY

PROVIDER: S-EPMC6735478 | biostudies-literature | 2019 Aug

REPOSITORIES: biostudies-literature

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Enumeration-screening method for the design of simple polygonal tensegrities.

Zhang Li-Yuan LY Li Yue Y Xu Guang-Kui GK Feng Xi-Qiao XQ

Proceedings. Mathematical, physical, and engineering sciences 20190828 2228

Tensegrities, consisting of axially pre-compressed bars and pre-stretched strings, hold broad applications in the design of, for instance, architectures, soft robotics and metamaterials. In this paper, we propose an enumeration-screening method to design planar tensegrities of simple polygonal shapes. In such a polygonal tensegrity, the strings are joined pair-wise to form a simple polygon (a planar shape consisting of straight, non-intersecting line segments) and only one bar is added at each n ...[more]

PMID: 31534417

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Project description:The diverse landscape of RNA conformational space includes many canyons and crevices that are distant from the lowest minimum free energy valley and remain unexplored by traditional RNA structure prediction methods. A complete description of the entire RNA folding landscape can facilitate identification of biologically important conformations. The Crumple algorithm rapidly enumerates all possible non-pseudoknotted structures for an RNA sequence without consideration of thermodynamics while filtering the output with experimental data. The Crumple algorithm provides an alternative approach to traditional free energy minimization programs for RNA secondary structure prediction. A complete computation of all non-pseudoknotted secondary structures can reveal structures that would not be predicted by methods that sample the RNA folding landscape based on thermodynamic predictions. The free energy minimization approach is often successful but is limited by not considering RNA tertiary and protein interactions and the possibility that kinetics rather than thermodynamics determines the functional RNA fold. Efficient parallel computing and filters based on experimental data make practical the complete enumeration of all non-pseudoknotted structures. Efficient parallel computing for Crumple is implemented in a ring graph approach. Filters for experimental data include constraints from chemical probing of solvent accessibility, enzymatic cleavage of paired or unpaired nucleotides, phylogenetic covariation, and the minimum number and lengths of helices determined from crystallography or cryo-electron microscopy. The minimum number and length of helices has a significant effect on reducing conformational space. Pairing constraints reduce conformational space more than single nucleotide constraints. Examples with Alfalfa Mosaic Virus RNA and Trypanosome brucei guide RNA demonstrate the importance of evaluating all possible structures when pseduoknots, RNA-protein interactions, and metastable structures are important for biological function. Crumple software is freely available at http://adenosine.chem.ou.edu/software.html.

Dataset Information

Enumeration-screening method for the design of simple polygonal tensegrities.

Publications

Enumeration-screening method for the design of simple polygonal tensegrities.

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