Dataset Information

Prokaryotic Diversity in Mangrove Sediments across Southeastern China Fundamentally Differs from That in Other Biomes.

ABSTRACT: Mangroves, as a blue carbon reservoir, provide an environment for a variety of microorganisms. Mangroves lie in special locations connecting coastal and estuarine areas and experience fluctuating conditions, which are expected to intensify with climate change, creating a need to better understand the relative roles of stochastic and deterministic processes in shaping microbial community assembly. Here, a study of microbial communities inhabiting mangrove sediments across southeastern China, spanning mangroves in six nature reserves, was conducted. We performed high-throughput DNA sequencing of these samples and compared them with data of 1,370 sediment samples collected from the Earth Microbiome Project (EMP) to compare the microbial diversity of mangroves with that of other biomes. Our results showed that prokaryotic alpha diversity in mangroves was significantly higher than that in other biomes and that microbial beta diversity generally clustered according to biome types. The core operational taxonomic units (OTUs) in mangroves were mostly assigned to Gammaproteobacteria, Deltaproteobacteria, Chloroflexi, and Euryarchaeota The majority of beta nearest-taxon index values were higher than 2, indicating that community assembly in mangroves was better explained through a deterministic process than through a stochastic process. Mean annual precipitation (MAP) and total organic carbon (TOC) were main deterministic factors explaining variation in the microbial community. This study fills a gap in addressing the unique microbial diversity of mangrove ecosystems and their microbial community assembly mechanisms.IMPORTANCE Understanding the underlying mechanisms of microbial community assembly patterns is a vital issue in microbial ecology. Mangroves, as an important and special ecosystem, provide a unique environment for examining the relative importance of stochastic and deterministic processes. We made the first global-scale comparison and found that microbial diversity was significantly different in mangrove sediments compared to that of other biomes. Furthermore, our results suggest that a deterministic process is more important in shaping microbial community assembly in mangroves.

SUBMITTER: Zhang CJ

PROVIDER: S-EPMC6739103 | biostudies-literature | 2019 Sep

REPOSITORIES: biostudies-literature

ACCESS DATA

Publications

Prokaryotic Diversity in Mangrove Sediments across Southeastern China Fundamentally Differs from That in Other Biomes.

Zhang Cui-Jing CJ Pan Jie J Duan Chang-Hai CH Wang Yong-Ming YM Liu Yang Y Sun Jian J Zhou Hai-Chao HC Song Xin X Li Meng M

mSystems 20190910 5

Mangroves, as a blue carbon reservoir, provide an environment for a variety of microorganisms. Mangroves lie in special locations connecting coastal and estuarine areas and experience fluctuating conditions, which are expected to intensify with climate change, creating a need to better understand the relative roles of stochastic and deterministic processes in shaping microbial community assembly. Here, a study of microbial communities inhabiting mangrove sediments across southeastern China, span ...[more]

PMID: 31506265

Similar Datasets

Project description:The present study compared the taxonomic diversity and evaluated the functional attributes of the bacterial species from Mandovi and Zuari mangrove sediments, Goa, using paired-end amplicon sequencing of 16S rDNA and culture-based analyses, respectively. 16S rDNA sequencing revealed Proteobacteria, Firmicutes, and Actinobacteria as the dominant phyla in both the sediments. However, the abundance of these phyla significantly differed between the samples. Bacteroidetes from Mandovi sediment, and Acidobacteria and Gemmatimonadetes from Zuari sediment were the other exclusive major phyla. Chloroflexi, Cyanobacteria, Nitrospirae, Planctomycetes, Verrucomicrobia, and WS3 were the minor phyla observed in both. However, a significant difference in the distribution of minor phyla and lower bacterial taxa under each phylum was noted between the sediments, indicating that the resident microbial flora completely differed between them. This was further validated by high values from distance matrix analyses between the samples. In addition, the pathogenic Vibrio sp. was recorded exclusively in Mandovi sediment, while higher abundance of ecologically important bacterial classes including Gammaproteobacteria, Alphaproteobacteria, Deltaproteobacteria, and Bacilli was observed in Zuari sediment. Taken together, the data indicated that Zuari sediment was taxonomically richer than Mandovi sediment, while a greater incidence of anthropogenic activities occurred in the latter. This observation was further validated by non-parametric richness estimators which were found to be higher for Zuari sediment. The cultured bacterial isolates, all identified as Firmicutes, were tested for activities related to biofertilization and production of enzymes to be used for bioremediation and chemotherapeutic applications. Higher number of bacterial isolates from Mandovi was found to produce indole-acetic-acid, tannase, xylanase, and glutaminase enzymes, and could solubilize phosphate. In contrast, higher proportion of bacterial isolates from Zuari sediment were capable of producing amylase, cellulase, gelatinase, laccase, lipase, protease, and asparaginase enzymes, emphasizing the fact that the Zuari mangrove sediment is a rich reservoir for economically and biotechnologically important bacterial species.

Project description:This study aimed to reveal the distribution characteristics and sources of dissolved organic matter (DOM) in sediments of typical lakes in the southeastern of the Hubei province and provide a reference for pollution control of eutrophic lakes. The sediments of four typical lakes (Liangzi, Baoan, Daye, and Qingshan) in the southeastern of the Hubei Province were investigated in May 2019. Ultraviolet-visible (UV-Vis) absorption spectroscopy and excitation-emission matrixes characteristics of DOM were obtained by UV-Vis spectrophotometry and three-dimensional fluorescence spectroscopy. Moreover, the DOM fluorescence components were resolved by parallel factor analysis (PARAFAC). The results showed that: (1) The absorption coefficient a350 in surface sediments followed the order: Baoan Lake (16.99 ± 3.82 m-1) > Qingshan Lake (15.37 ± 3.8 m-1) > Liangzi Lake (12.54 ± 5.58 m-1) > Daye Lake (12.43 ± 1.43 m-1). Specifically, with increasing depth in the sediment cores, a350 increased and then gradually decreased in Daye Lake and Baoan Lake, but fluctuated in Liangzi Lake and Qingshan Lake with a roughly decreasing trend. (2) Two humic-like components (C1, C2) and one protein-like component (C3) were identified via PARAFAC. This analysis also showed that the surface sediment fluorescent dissolved organic matter (FDOM) was dominated by protein-like, while the sediment core FDOM was dominated by humic-like in Liangzi Lake. The proportion of humic-like in FDOM was higher than protein-like in surface sediments and sediment cores of Baoan, Daye, and Qingshan Lakes. (3) The DOM of surface sediments in the Liangzi Lake comprised mostly autochthonous components, mainly produced by the vital activities of aquatic organisms. The DOM of surface sediments in Baoan Lake and Qingshan Lake showed weak humic and moderate autochthonous characteristics. The humification of DOM in sediment cores of Liangzi, Baoan, and Qingshan Lakes gradually decreased from depth to the surface. The DOM in surface sediments of Daye Lake had strong humic and moderate autochthonous characteristics. (4) In general, the DOM of lake sediments in southeastern Hubei Province has dual-contribution characteristics representing terrigenous and endogenous sources. In the restoration and treatment of lake ecology, both internal and terrestrial pollution should be considered. At the same time, it is noteworthy that cyanobacteria depletion and aquatic residues caused potential internal pollution.

Dataset Information

Prokaryotic Diversity in Mangrove Sediments across Southeastern China Fundamentally Differs from That in Other Biomes.

Publications

Prokaryotic Diversity in Mangrove Sediments across Southeastern China Fundamentally Differs from That in Other Biomes.

Similar Datasets

OmicsDI is part of the ELIXIR infrastructure

Tweets