SOBIR1/EVR prevents precocious initiation of fiber differentiation during wood development through a mechanism involving BP and ERECTA.
Ontology highlight
ABSTRACT:
SUBMITTER: Milhinhos A
PROVIDER: S-EPMC6744917 | biostudies-literature |
REPOSITORIES: biostudies-literature
Similar Datasets
Project description:BackgroundThe cotton (Gossypium spp.) fiber cell is an important unicellular model for studying cell differentiation. There is evidence suggesting that phosphorylation is a critical post-translational modification involved in regulation of a wide range of cell activities. Nevertheless, the sites of phosphorylation in G. hirsutum and their regulatory roles in fiber cell initiation are largely unknown. In this study, we employed a mass spectrometry-based phosphoproteomics to conduct a global and site-specific phosphoproteome profiling between ovules of a fuzzless-lintless (fl) Upland cotton (G. hirsutum) mutant and its isogenic parental wild type (WT) at -3 and 0 days post-anthesis (DPA).ResultsA total of 830 phosphopeptides and 1,592 phosphorylation sites from 619 phosphoproteins were identified by iTRAQ (isobaric tags for relative and absolute quantitation). Of these, 76 phosphoproteins and 1,100 phosphorylation sites were identified for the first time after searching the P3DB public database using the BLAST program. Among the detected phosphopeptides, 69 were differentially expressed between the fl mutant and its WT in ovules at -3 and 0 DPA. An analysis using the Motif-X program uncovered 19 phosphorylation motifs, 8 of which were unique to cotton. A further metabolic pathway analysis revealed that the differentially phosphorylated proteins were involved in signal transduction, protein modification, carbohydrate metabolic processes, and cell cycle and cell proliferation.ConclusionsOur phosphoproteomics-based research provides the first global overview of phosphorylation during cotton fiber initiation, and also offers a helpful dataset for elucidation of signaling networks in fiber development of G. hirsutum.
| S-EPMC4070576 | biostudies-literature
Project description:Located on the Pamir Plateau in Xinjiang Province, China, the Ji'erzankale Necropolis dates back to 2500 yr BP. Many materials that have been unearthed in this cemetery, including shoo konghou (musical instrument), bronze mirrors and glass beads, suggest cultural transference between East and West. Furthermore, small-sized and rounded fire altars made from sweet-scented Sabina were found for the first time and regarded as implements for fire veneration. We identified 70 wooden objects from 25 tombs within the Necropolis, and found that each object had been made from one of seven tree species. Analysis revealed that the inhabitants of the region mainly used the most widely available types of wood, namely Betula and Populus. People also specifically chose inflammable Populus wood to make hearth boards and hand drills (both are used for making fire by drilling), rigid Betula wood to craft wooden plates. Salix was used for fashioning wooden sticks, while sweet-scented Sabina was the preferred choice for making fire altars. Lonicera was selected for arrow shaft manufacture and Fraxinus syriaca, which has a beautiful grain, was chosen for making musical instruments. Conscious selection of different types of wood indicates that people of the Pamir Plateau were aware of the properties of various types of timbers, and were able to exploit these properties to the full. In turn, this demonstrates their wisdom and their ability to survive in, and adapt to, their local environment.
| S-EPMC4550437 | biostudies-literature
Project description:The surfaces of poplar wood fibers were modified using high-temperature hot air (HTHA) treatment and silane coupling agent. The single factor test was then used to investigate the performances (e.g., the change of functional groups, polarity, cellulose crystallinity, and thermal stability) of modified poplar wood fibers (mPWF) through Fourier transform infrared spectrometry, X-ray diffraction and thermo-gravimetric analysis for the subsequent preparation of wood-plastic composites (WPCs). The effect of HTHA treatment conditions-such as temperature, inlet air velocity, and feed rate-on the performances of WPCs was also investigated by scanning electron microscopy and dynamic mechanical analysis. The main findings indicated that HTHA treatment could promote the hydration of mPWF and improve the mechanical properties of WPCs. Treatment temperature strongly affected the mechanical properties and moisture adsorption characteristics of the prepared composites. With the increase of treated temperature and feed rate, the number of hydroxyl groups, holocellulose content, and the pH of mPWF decreased. The degree of crystallinity and thermal stability and the storage modulus of the prepared composites of mPWF increased. However, dimensional stability and water absorption of WPCs significantly reduced. The best mechanical properties enhancement was observed with treatment temperature at 220 °C. This study demonstrated the feasibility for the application of an HTHA treatment in the WPC production industry.
| S-EPMC5503328 | biostudies-other
Project description:Mutations in PINK1 and PARK2 cause autosomal recessive parkinsonism, a neurodegenerative disorder that is characterized by the loss of dopaminergic neurons. To discover potential therapeutic pathways, we identified factors that genetically interact with Drosophila park and Pink1. We found that overexpression of the translation inhibitor Thor (4E-BP) can suppress all of the pathologic phenotypes, including degeneration of dopaminergic neurons in Drosophila. 4E-BP is activated in vivo by the TOR inhibitor rapamycin, which could potently suppress pathology in Pink1 and park mutants. Rapamycin also ameliorated mitochondrial defects in cells from individuals with PARK2 mutations. Recently, 4E-BP was shown to be inhibited by the most common cause of parkinsonism, dominant mutations in LRRK2. We also found that loss of the Drosophila LRRK2 homolog activated 4E-BP and was also able to suppress Pink1 and park pathology. Thus, in conjunction with recent findings, our results suggest that pharmacologic stimulation of 4E-BP activity may represent a viable therapeutic approach for multiple forms of parkinsonism.
| S-EPMC2745154 | biostudies-literature
Project description:We report an investigation of conditions for the initiation of fiber fuse (IFF), a kind of catastrophic damage that troubles all kinds of optical fibers, in silica-based optical fibers. The fibers of different chemical compositions were processed and tested in controlled conditions without mechanical damages before the IFF. For all the fibers of IFF, the same correlation between the critical temperatures and the optical powers transmitted therein was revealed for the first time. The fibers of different chemical compositions exhibited different resistances to the IFF under the threshold powers for propagation of fiber fuses. The results offered promise for predicting fiber fuses in optical fiber systems, which could facilitate avoiding catastrophic losses. They could direct the optimization of fiber production technologies for suppressing the damages, as well as open a new path towards controlled utilization of fiber fuse in in-fiber microstructure fabrication.
| S-EPMC6690914 | biostudies-literature
Project description:The domestication of forest trees for a more sustainable fiber bioeconomy has long been hindered by the complexity and plasticity of lignin, a biopolymer in wood that is recalcitrant to chemical and enzymatic degradation. Here, we show that multiplex CRISPR editing enables precise woody feedstock design for combinatorial improvement of lignin composition and wood properties. By assessing every possible combination of 69,123 multigenic editing strategies for 21 lignin biosynthesis genes, we deduced seven different genome editing strategies targeting the concurrent alteration of up to six genes and produced 174 edited poplar variants. CRISPR editing increased the wood carbohydrate-to-lignin ratio up to 228% that of wild type, leading to more-efficient fiber pulping. The edited wood alleviates a major fiber-production bottleneck regardless of changes in tree growth rate and could bring unprecedented operational efficiencies, bioeconomic opportunities, and environmental benefits.
| S-EPMC10542590 | biostudies-literature
Project description:The resilience of global food security is a critical concern. Facing limited access to land and potential disruption of the food markets, alternative, scalable, and efficient production systems are needed as a complementary buffer for maintenance of food production integrity. The purpose of this study was to introduce an alternative hydroponic potato growing system where potatoes are grown in bare wood fiber as a growing medium. A system utilizing drip irrigation and plastic bags as containers was tested for three different types of wood fiber, two cultivars and two fertigation strategies. Implementation of the system resulted in ~300% higher tuber production when compared to the local conventional farming. Mineral composition of the tubers obtained from hydroponic system was similar to the composition of tubers grown in the field and revealed potential for biofortification. In addition, a fertigation strategy where the two application points were separated across the root zone resulted in tubers with dry matter content comparable to the potatoes grown in soil. The recyclability, reusability, and simplicity of this solution may encourage its application for improving security of food production in selected areas of the world as well as its utilization in urban agriculture.
| S-EPMC10238232 | biostudies-literature
Project description:The aim of this study was to investigate the effect of recycling on polypropylene (PP) and wood-fiber thermoplastic composites (WPCs) using a co-rotating twin-screw extruder. After nine extrusion passes microscopy studies confirmed that the fiber length decreased with the increased number of recycling passes but the increased processing time also resulted in excellent dispersion and interfacial adhesion of the wood fibers in the PP matrix. Thermal, rheological, and mechanical properties were studied. The repeated extrusion passes had minimal effect on thermal behavior and the viscosity decreased with an increased number of passes, indicating slight degradation. The recycling processes had an effect on the tensile strength of WPCs while the effect was minor on the PP. However, even after the nine recycling passes the strength of WPC was considerably better (37 MPa) compared to PP (28 MPa). The good degree of property retention after recycling makes this recycling strategy a viable alternative to discarding the materials. Thus, it has been demonstrated that, by following the most commonly used extrusion process, WPCs can be recycled several times and this methodology can be industrially adapted for the manufacturing of recycled products.
| S-EPMC7463641 | biostudies-literature
Project description:Chromatin modifiers act to coordinate gene expression changes critical to neuronal differentiation from neural stem/progenitor cells (NSPCs). Lysine-specific methyltransferase 2D (KMT2D) encodes a histone methyltransferase that promotes transcriptional activation and is frequently mutated in cancers and in the majority (>70%) of patients diagnosed with the congenital, multisystem intellectual disability disorder Kabuki syndrome 1 (KS1). Critical roles for KMT2D are established in various non-neural tissues, but the effects of KMT2D loss in brain cell development have not been described. We conducted parallel studies of proliferation, differentiation, transcription, and chromatin profiling in KMT2D-deficient human and mouse models to define KMT2D-regulated functions in neurodevelopmental contexts, including adult-born hippocampal NSPCs in vivo and in vitro. We report cell-autonomous defects in proliferation, cell cycle, and survival, accompanied by early NSPC maturation in several KMT2D-deficient model systems. Transcriptional suppression in KMT2D-deficient cells indicated strong perturbation of hypoxia-responsive metabolism pathways. Functional experiments confirmed abnormalities of cellular hypoxia responses in KMT2D-deficient neural cells and accelerated NSPC maturation in vivo. Together, our findings support a model in which loss of KMT2D function suppresses expression of oxygen-responsive gene programs important to neural progenitor maintenance, resulting in precocious neuronal differentiation in a mouse model of KS1.
| S-EPMC6824316 | biostudies-literature
Project description:Kabuki syndrome 1 (KS1) is a Mendelian disorder of the epigenetic machinery caused by mutations in the gene encoding KMT2D, which methylates lysine 4 on histone H3 (H3K4). KS1 is characterized by intellectual disability, postnatal growth retardation, and distinct craniofacial dysmorphisms. A mouse model (Kmt2d+/?Geo) exhibits features of the human disorder and has provided insight into other phenotypes; however, the mechanistic basis of skeletal abnormalities and growth retardation remains elusive. Using high-resolution micro-CT, we show that Kmt2d+/?Geo mice have shortened long bones and ventral bowing of skulls. In vivo expansion of growth plates within skulls and long bones suggests disrupted endochondral ossification as a common disease mechanism. Stable chondrocyte cell lines harboring inactivating mutations in Kmt2d exhibit precocious differentiation, further supporting this mechanism. A known inducer of chondrogenesis, SOX9, and its targets show markedly increased expression in Kmt2d-/- chondrocytes. By transcriptome profiling, we identify Shox2 as a putative KMT2D target. We propose that decreased KMT2D-mediated H3K4me3 at Shox2 releases Sox9 inhibition and thereby leads to enhanced chondrogenesis, providing a potentially novel and plausible explanation for precocious chondrocyte differentiation. Our findings provide insight into the pathogenesis of growth retardation in KS1 and suggest therapeutic approaches for this and related disorders.
| S-EPMC6824315 | biostudies-literature