Unknown

Dataset Information

0

Transcriptomic and Metabolomics Analysis of Different Endosperm Region under Nitrogen Treatments.


ABSTRACT: Storage protein distribution in wheat-grain endosperm is heterogeneous, but the underlying molecular mechanism remains unclear. Two parts of the endosperm region, the innermost endosperm (IE) region and the remaining endosperm (RE) region, grown under low nitrogen (LN) and high nitrogen (HN) treatments were used to perform metabolomic and transcriptomic analysis. We identified 533 and 503 differentially expressed genes (DEGs) with at least a two-fold expression change (p < 0.05) between IE and RE, among which 81 and 78 transcripts under LN and HN, respectively, related to carbon and nitrogen metabolism, and encoded transcription factors or proteins involved in post-translational modification (PTM). The significantly differentially abundant metabolites between IE and RE were mainly amino acids, N-compounds, carbohydrates, and nucleic acids. More upregulated transcripts and metabolites were identified in RE than IE under HN conditions, indicating that HN activates metabolism in the endosperm periphery. In addition to carbon and nitrogen metabolism, transcription factors and protein PTMs, such as phosphorylation and acetylation, might determine the protein heterogeneous distribution between IE and RE and its response to nitrogen fertilizer supply.

SUBMITTER: Ma D 

PROVIDER: S-EPMC6747615 | biostudies-literature | 2019 Aug

REPOSITORIES: biostudies-literature

altmetric image

Publications

Transcriptomic and Metabolomics Analysis of Different Endosperm Region under Nitrogen Treatments.

Ma Dongyun D   Gao Honghuan H   Du Chenyang C   Li Lingli L   Sun Wan W   Liu Sujun S   Wang Chenyang C   Xie Yingxin Y   Kang Guozhang G  

International journal of molecular sciences 20190828 17


Storage protein distribution in wheat-grain endosperm is heterogeneous, but the underlying molecular mechanism remains unclear. Two parts of the endosperm region, the innermost endosperm (IE) region and the remaining endosperm (RE) region, grown under low nitrogen (LN) and high nitrogen (HN) treatments were used to perform metabolomic and transcriptomic analysis. We identified 533 and 503 differentially expressed genes (DEGs) with at least a two-fold expression change (<i>p</i> < 0.05) between I  ...[more]

Similar Datasets

| S-EPMC10945327 | biostudies-literature
| S-EPMC4038385 | biostudies-literature
| S-EPMC5898717 | biostudies-literature
| S-EPMC6400075 | biostudies-literature
| S-EPMC6440951 | biostudies-literature
2019-09-25 | GSE133846 | GEO
| S-EPMC6842963 | biostudies-literature
| S-EPMC6572190 | biostudies-literature
| S-EPMC6975742 | biostudies-literature
| S-EPMC8028447 | biostudies-literature