Dataset Information

Association Between Arachidonic Acid and Chicken Meat and Egg Flavor, and Their Genetic Regulation.

ABSTRACT: In Japan, the majority of chicken meat is obtained from fast-growing broiler chickens. Because most Japanese chicken breeds have a low meat yield and egg production, many of these breeds are endangered. Recently, the palatability of meat and eggs of native chickens has been reevaluated in the Japanese market. Jidori, which means chicken from the local, is an indigenous local chicken that is more delicious, firmer in texture, and more expensive than the broiler chickens. Most Japanese consumers recognize that the meat of Jidori chicken is richer in flavor than that of the broiler chicken. However, the reason for this rich flavor of the meat of Jidori chicken has not been elucidated. Recently, we found that arachidonic acid (AA) (C20:4n-6), a polyunsaturated fatty acid, is associated with the rich flavor of the meat and eggs of Jidori chicken. The present paper summarizes the discovery of the involvement of AA in the flavor characteristic of the meat and eggs of chicken, and also the genetic regulation of the AA content in the meat and eggs of Jidori chicken.

SUBMITTER: Takahashi H

PROVIDER: S-EPMC6756496 | biostudies-literature | 2018

REPOSITORIES: biostudies-literature

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Association Between Arachidonic Acid and Chicken Meat and Egg Flavor, and Their Genetic Regulation.

Takahashi Hideaki H

The journal of poultry science 20180225 3

In Japan, the majority of chicken meat is obtained from fast-growing broiler chickens. Because most Japanese chicken breeds have a low meat yield and egg production, many of these breeds are endangered. Recently, the palatability of meat and eggs of native chickens has been reevaluated in the Japanese market. Jidori, which means chicken from the local, is an indigenous local chicken that is more delicious, firmer in texture, and more expensive than the broiler chickens. Most Japanese consumers r ...[more]

PMID: 32055170

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Project description:Meat and egg-type chickens have been selected for several generations for different traits. Artificial and natural selection for different phenotypes can change frequency of genetic variants, leaving particular genomic footprints throghtout the genome. Thus, the aims of this study were to sequence 28 chickens from two Brazilian lines (meat and white egg-type) and use this information to characterize genome-wide genetic variations, identify putative regions under selection using Fst method, and find putative pathways under selection.A total of 13.93 million SNPs and 1.36 million INDELs were identified, with more variants detected from the broiler (meat-type) line. Although most were located in non-coding regions, we identified 7255 intolerant non-synonymous SNPs, 512 stopgain/loss SNPs, 1381 frameshift and 1094 non-frameshift INDELs that may alter protein functions. Genes harboring intolerant non-synonymous SNPs affected metabolic pathways related mainly to reproduction and endocrine systems in the white-egg layer line, and lipid metabolism and metabolic diseases in the broiler line. Fst analysis in sliding windows, using SNPs and INDELs separately, identified over 300 putative regions of selection overlapping with more than 250 genes. For the first time in chicken, INDEL variants were considered for selection signature analysis, showing high level of correlation in results between SNP and INDEL data. The putative regions of selection signatures revealed interesting candidate genes and pathways related to important phenotypic traits in chicken, such as lipid metabolism, growth, reproduction, and cardiac development.In this study, Fst method was applied to identify high confidence putative regions under selection, providing novel insights into selection footprints that can help elucidate the functional mechanisms underlying different phenotypic traits relevant to meat and egg-type chicken lines. In addition, we generated a large catalog of line-specific and common genetic variants from a Brazilian broiler and a white egg layer line that can be used for genomic studies involving association analysis with phenotypes of economic interest to the poultry industry.

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Dataset Information

Association Between Arachidonic Acid and Chicken Meat and Egg Flavor, and Their Genetic Regulation.

Publications

Association Between Arachidonic Acid and Chicken Meat and Egg Flavor, and Their Genetic Regulation.

Similar Datasets

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