Genome-Wide SNPs and InDels Characteristics of Three Chinese Cattle Breeds.
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ABSTRACT:
SUBMITTER: Zhang F
PROVIDER: S-EPMC6769757 | biostudies-literature | 2019 Aug
REPOSITORIES: biostudies-literature
Publications
Genome-Wide SNPs and InDels Characteristics of Three Chinese Cattle Breeds.
Zhang Fengwei F Qu Kaixing K Chen Ningbo N Hanif Quratulain Q Jia Yutang Y Huang Yongzhen Y Dang Ruihua R Zhang Jicai J Lan Xianyong X Chen Hong H Huang Bizhi B Lei Chuzhao C
Animals : an open access journal from MDPI 20190822 9
We report genome characterization of three native Chinese cattle breeds discovering ~34.3 M SNPs and ~3.8 M InDels using whole genome resequencing. On average, 10.4 M SNPs were shared amongst the three cattle breeds, whereas, 3.0 M, 4.9 M and 5.8 M were specific to LQ, WN and WS breeds, respectively. Gene ontology (GO)analysis revealed four immune response-related GO terms were over represented in all samples, while two immune signaling pathways were significantly over-represented in WS cattle. ...[more]
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