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Emergence of Function and Selection from Recursively Programmed Polymerisation Reactions in Mineral Environments.

ABSTRACT: Living systems are characterised by an ability to sustain chemical reaction networks far-from-equilibrium. It is likely that life first arose through a process of continual disruption of equilibrium states in recursive reaction networks, driven by periodic environmental changes. Herein, we report the emergence of proto-enzymatic function from recursive polymerisation reactions using amino acids and glycolic acid. Reactions were kept out of equilibrium by diluting products 9:1 in fresh starting solution at the end of each recursive cycle, and the development of complex high molecular weight species is explored using a new metric, the Mass Index, which allows the complexity of the system to be explored as a function of cycle. This process was carried out on a range of different mineral environments. We explored the hypothesis that disrupting equilibrium via recursive cycling imposes a selection pressure and subsequent boundary conditions on products. After just four reaction cycles, product mixtures from recursive reactions exhibit greater catalytic activity and truncation of product space towards higher-molecular-weight species compared to non-recursive controls.

SUBMITTER: Doran D

PROVIDER: S-EPMC6772075 | biostudies-literature | 2019 Aug

REPOSITORIES: biostudies-literature

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Emergence of Function and Selection from Recursively Programmed Polymerisation Reactions in Mineral Environments.

Doran David D Abul-Haija Yousef M YM Cronin Leroy L

Angewandte Chemie (International ed. in English) 20190712 33

Living systems are characterised by an ability to sustain chemical reaction networks far-from-equilibrium. It is likely that life first arose through a process of continual disruption of equilibrium states in recursive reaction networks, driven by periodic environmental changes. Herein, we report the emergence of proto-enzymatic function from recursive polymerisation reactions using amino acids and glycolic acid. Reactions were kept out of equilibrium by diluting products 9:1 in fresh starting s ...[more]

PMID: 31206983

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Project description:BackgroundA thorough verification of the ability of genomic selection (GS) to predict estimated breeding values for pea (Pisum sativum L.) grain yield is pending. Prediction for different environments (inter-environment prediction) has key importance when breeding for target environments featuring high genotype × environment interaction (GEI). The interest of GS would increase if it could display acceptable prediction accuracies in different environments also for germplasm that was not used in model training (inter-population prediction).ResultsSome 306 genotypes belonging to three connected RIL populations derived from paired crosses between elite cultivars were genotyped through genotyping-by-sequencing and phenotyped for grain yield, onset of flowering, lodging susceptibility, seed weight and winter plant survival in three autumn-sown environments of northern or central Italy. The large GEI for grain yield and its pattern (implying larger variation across years than sites mainly due to year-to-year variability for low winter temperatures) encouraged the breeding for wide adaptation. Wider within-population than between-population variation was observed for nearly all traits, supporting GS application to many lines of relatively few elite RIL populations. Bayesian Lasso without structure imputation and 1% maximum genotype missing rate (including 6058 polymorphic SNP markers) was selected for GS modelling after assessing different GS models and data configurations. On average, inter-environment predictive ability using intra-population predictions reached 0.30 for yield, 0.65 for onset of flowering, 0.64 for seed weight, and 0.28 for lodging susceptibility. Using inter-population instead of intra-population predictions reduced the inter-environment predictive ability to 0.19 for grain yield, 0.40 for onset of flowering, 0.28 for seed weight, and 0.22 for lodging susceptibility. A comparison of GS vs phenotypic selection (PS) based on predicted genetic gains per unit time for same selection costs suggested greater efficiency of GS for all traits under various selection scenarios. For yield, the advantage in predicted efficiency of GS over PS was at least 80% using intra-population predictions and 20% using inter-population predictions. A genome-wide association study confirmed the highly polygenic control of most traits.ConclusionsGenome-enabled predictions can increase the efficiency of pea line selection for wide adaptation to Italian environments relative to phenotypic selection.

Project description:Investigation of polymerisation kinetics using ATR-FTIR systems is common in many dental studies. However, peak selection methods to calculate monomer-polymer conversion can vary, consequently affecting final results. Thus, the aim of this study is to experimentally confirm which method is less prone to systematic errors. Three commercial restorative materials were tested-Vertise Flow (VF), Constic and Activa Bioactive Restorative Kids. Firstly, Attenuated Total Reflectance Fourier Transform Infra-Red (ATR-FTIR) (Spectrum One, Perkin-Elmer, UK) spectra of monomers were acquired-10-methacryloyloxy decyl dihydrogen phosphate (10-MDP), bisphenol-A glycidyl dimethacrylate (Bis-GMA), 2-hydroxyethyl methacrylate (HEMA), triethyelene glycol dimethacrylate (TEGDMA) and urethane dimethacrylate (UDMA) to investigate proportionality of methacrylate peak heights versus concentration. Spectral changes upon light exposure of 2 mm discs of the restorative materials (irradiated for 20 s, LED curing unit 1100-1330 mW/cm2) were assessed to study polymerisation kinetics (n = 3), with continuous acquisition of spectra, before, during and after light exposure. Peak differences and degrees of conversion (DC %) were calculated using 1320/1336, 1320/1350 and 1636/1648 cm-1 as reaction/reference peaks. Inferential statistics included a MANOVA and within-subjects repeated measures ANOVA design (5% significance level). Proportionality of methacrylate peak height to concentration was confirmed, with the 1320/1352 cm-1 peak combination showing the lowest coefficient of variation (8%). Difference spectra of the polymerisation reaction showed noise interference around the 1500-1800 cm-1 region. Across the different materials, DC % results are highly dependent upon peak selection (p<0.001), with higher variability associated to the 1636 cm-1. Significant differences in the materials were only detected when the 1320 cm-1 peak was used (p<0.05). Within the same materials, methods were significantly different for Constic and Activa (p<0.05). It is possible to conclude that the 1320 cm-1 peak is more adequate to assess polymerisation of methacrylates and is therefore recommended.

Dataset Information

Emergence of Function and Selection from Recursively Programmed Polymerisation Reactions in Mineral Environments.

Publications

Emergence of Function and Selection from Recursively Programmed Polymerisation Reactions in Mineral Environments.

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