Access to RNA-sequencing data from 1,173 plant species: The 1000 Plant transcriptomes initiative (1KP).
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ABSTRACT:
SUBMITTER: Carpenter EJ
PROVIDER: S-EPMC6808545 | biostudies-literature | 2019 Oct
REPOSITORIES: biostudies-literature
Publications
Access to RNA-sequencing data from 1,173 plant species: The 1000 Plant transcriptomes initiative (1KP).
Carpenter Eric J EJ Matasci Naim N Ayyampalayam Saravanaraj S Wu Shuangxiu S Sun Jing J Yu Jun J Jimenez Vieira Fabio Rocha FR Bowler Chris C Dorrell Richard G RG Gitzendanner Matthew A MA Li Ling L Du Wensi W K Ullrich Kristian K Wickett Norman J NJ Barkmann Todd J TJ Barker Michael S MS Leebens-Mack James H JH Wong Gane Ka-Shu GK
GigaScience 20191001 10
<h4>Background</h4>The 1000 Plant transcriptomes initiative (1KP) explored genetic diversity by sequencing RNA from 1,342 samples representing 1,173 species of green plants (Viridiplantae).<h4>Findings</h4>This data release accompanies the initiative's final/capstone publication on a set of 3 analyses inferring species trees, whole genome duplications, and gene family expansions. These and previous analyses are based on de novo transcriptome assemblies and related gene predictions. Here, we asse ...[more]
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