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A suitable enzymatic method for starch quantification in different organic matrices.

ABSTRACT: Starch can represent 70-80% of the cereals grains (on a dry matter basis) used for livestock feeding. Several methods have been developed to estimate the feed starch contents of energy feed sources. However, the efficiency of these methods to evaluate the starch content in other feed sources, as well as other types of samples used to evaluate starch availability in the gastrointestinal tract, such as digesta and faeces, remains unclear. Furthermore, most of the currently used starch analysis methods have not been effectively evaluated, being only applied to samples of sporadic experiments, without a wide-ranging validation of the procedures and results. Here, we propose a modification of a method for analysing the starch content in different organic matrices normally evaluated in ruminant nutrition studies. The evaluated organic matrices were: soybean meal, soybean hull, Tifton 85 Bermuda grass hay, abomasal digesta, and faeces. •The modified method is more feasible than the original procedures.•The modified method estimates the starch contents in different organic matrices with accuracy and precision.

SUBMITTER: Silva BC

PROVIDER: S-EPMC6812349 | biostudies-literature | 2019

REPOSITORIES: biostudies-literature

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A suitable enzymatic method for starch quantification in different organic matrices.

Silva Breno de Castro BC Godoi Letícia Artuzo LA Valadares Filho Sebastião de Campos SC Zanetti Diego D Benedeti Pedro Del Bianco PDB Detmann Edenio E

MethodsX 20191004

Starch can represent 70-80% of the cereals grains (on a dry matter basis) used for livestock feeding. Several methods have been developed to estimate the feed starch contents of energy feed sources. However, the efficiency of these methods to evaluate the starch content in other feed sources, as well as other types of samples used to evaluate starch availability in the gastrointestinal tract, such as digesta and faeces, remains unclear. Furthermore, most of the currently used starch analysis met ...[more]

PMID: 31667131

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Project description:Hepatitis B virus (HBV) is a para-retrovirus that reverse transcribes its pregenomic RNA into relaxed circular DNA inside viral nucleocapsids. The number of HBV genomes produced in vitro is typically quantified using commercial silica-membrane-based nucleic acid purification kits to isolate total DNA followed by HBV-specific quantitative PCR (qPCR). However, despite the convenience of commercial kits, this procedure is costly and time-consuming due to multiple centrifugation steps, which produce unnecessary waste. Here, we report a rapid, cost-effective, and environmentally friendly total DNA preparation method. The assay is based on the simple incubation of detergent and proteinase K with cells or cell-free supernatants to permeabilize cells and disrupt viral particles. After heat inactivation and subsequent centrifugation to clear the lysates, DNA samples are directly subjected to qPCR to quantify HBV genomes. As a proof of concept, the assay was developed in 12-well plates to assess intra- and extracellular HBV genome equivalents (GEqs) of stably viral-replicating cell lines (e.g., HepAD38) and HBV-infected HepG2-NTCP cells, both treated with lamivudine (LMV), an HBV replication inhibitor. Viral DNA was also prepared from the serum of patients chronically infected with HBV. To validate the assay, a representative commercial DNA isolation kit was used side-by-side to isolate intra- and extracellular HBV DNA. Both methods yielded comparable amounts of HBV GEqs with comparable LMV 50% efficient concentration (EC50) values. The assay was subsequently adapted to 96- and 384-well microtiter plates using HepAD38 cells. The EC50 values were comparable to those obtained in 12-well plates. In addition, the calculated coefficient of variation, Z' values, and assay window demonstrated high reproducibility and quality. We devised a novel, robust, reproducible, high-throughput microtiter plate DNA preparation method suitable for quantifying HBV GEqs by qPCR analysis. This strategy enables rapid and convenient quantitative analysis of multiple viral DNA samples in parallel to investigate intracellular HBV replication and the secretion of DNA-containing viral particles.

Dataset Information

A suitable enzymatic method for starch quantification in different organic matrices.

Publications

A suitable enzymatic method for starch quantification in different organic matrices.

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