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Computational approaches for the discovery of splicing regulatory RNA structures.

ABSTRACT: Global RNA structure and local functional motifs mediate interactions important in determining the rates and patterns of mRNA splicing. In this review, we overview approaches for the computational prediction of RNA secondary structure with a special emphasis on the discovery of motifs important to RNA splicing. The process of identifying and modeling potential splicing regulatory structures is illustrated using a recently-developed approach for RNA structural motif discovery, the ScanFold pipeline, which is applied to the identification of a known splicing regulatory structure in influenza virus.

SUBMITTER: Andrews RJ

PROVIDER: S-EPMC6819252 | biostudies-literature | 2019 Nov - Dec

REPOSITORIES: biostudies-literature

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Computational approaches for the discovery of splicing regulatory RNA structures.

Andrews Ryan J RJ Moss Walter N WN

Biochimica et biophysica acta. Gene regulatory mechanisms 20190429 11-12

Global RNA structure and local functional motifs mediate interactions important in determining the rates and patterns of mRNA splicing. In this review, we overview approaches for the computational prediction of RNA secondary structure with a special emphasis on the discovery of motifs important to RNA splicing. The process of identifying and modeling potential splicing regulatory structures is illustrated using a recently-developed approach for RNA structural motif discovery, the ScanFold pipeli ...[more]

PMID: 31048028

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