MetaQUBIC: a computational pipeline for gene-level functional profiling of metagenome and metatranscriptome.
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ABSTRACT:
SUBMITTER: Ma A
PROVIDER: S-EPMC6821265 | biostudies-literature | 2019 Nov
REPOSITORIES: biostudies-literature
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MetaQUBIC: a computational pipeline for gene-level functional profiling of metagenome and metatranscriptome.
Ma Anjun A Sun Minxuan M McDermaid Adam A Liu Bingqiang B Ma Qin Q
Bioinformatics (Oxford, England) 20191101 21
<h4>Motivation</h4>Metagenomic and metatranscriptomic analyses can provide an abundance of information related to microbial communities. However, straightforward analysis of this data does not provide optimal results, with a required integration of data types being needed to thoroughly investigate these microbiomes and their environmental interactions.<h4>Results</h4>Here, we present MetaQUBIC, an integrated biclustering-based computational pipeline for gene module detection that integrates both ...[more]
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